Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F19
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    27   0.14 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.3  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   7.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   9.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 365 VLWKPNYI-NSLLTGDIDYLFYLIENCFFLLVNWTVGWY 252
           V+WKP  I  S    D++Y  +  + CF    +WT   Y
Sbjct: 133 VVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGY 171


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -1

Query: 481 VFDSQLTEKACSRS 440
           VFDSQLT KA S++
Sbjct: 300 VFDSQLTVKAVSKN 313


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 275 VNWTVGWYRDRVLNNT 228
           VNWT+G     V+N T
Sbjct: 520 VNWTIGQLEAEVINCT 535


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 193 FLAGKAYAAISKSASLQRQLMYLLIDFEMVFPSI 92
           FLAG   AAISK+     + + LL+  + +   I
Sbjct: 14  FLAGGVAAAISKTTVAPIERVKLLLQVQHISKQI 47


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 193 FLAGKAYAAISKSASLQRQLMYLLIDFEMVFPSI 92
           FLAG   AAISK+     + + LL+  + +   I
Sbjct: 14  FLAGGVAAAISKTTVAPIERVKLLLQVQHISKQI 47


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 511 LEDRRHDYHGVFDSQLTEKACSR 443
           L  R HD+         E++CSR
Sbjct: 217 LRSRTHDFQHTSSRYSRERSCSR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,836
Number of Sequences: 438
Number of extensions: 4290
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)