Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F18
(756 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 33 0.058
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S... 28 1.7
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 28 1.7
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy... 28 1.7
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 2.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 6.7
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 25 8.8
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 25 8.8
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch... 25 8.8
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 25 8.8
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 32.7 bits (71), Expect = 0.058
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +3
Query: 78 MFGKIVFLLLVALCVGVQSRYLIVSEPVYYIQHYEEPELLTSSRV 212
MFGK+ LL+ A + +Q + + P+ ++H E ELL ++RV
Sbjct: 1 MFGKVSSLLVFASFLIIQGAFATLVAPIGDLEHLSEIELLYTNRV 45
>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
S28|Schizosaccharomyces pombe|chr 2|||Manual
Length = 288
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 585 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 716
+KI ASAT DFI N+ +N F S DTS++ N GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +3
Query: 207 RVRRDAHGALTLNSDGTSGAGVKVPFAGNDKNIVSAI-GSLDLTNRQKLGAATAGVALDN 383
R+ RD + N DGTSGA + F G K + + S D+++ K AA VALD
Sbjct: 442 RIVRDIADVIEDNMDGTSGALYAIFFHGFAKGMKDTLEKSKDISS--KTWAAGLKVALDT 499
Query: 384 V 386
+
Sbjct: 500 L 500
>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 194
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 79 CSGRSSFYCLSLCASAFKAD 138
C G SSFYCLS+ +K D
Sbjct: 132 CQGYSSFYCLSIFDRYYKPD 151
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -3
Query: 739 DFMKGESNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 575
DF K N L ++ FSF SRE S R +K + +A+ P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 6.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -3
Query: 370 TPAVAAPSFCLLVKSKEPIALTIFLSLPAKG-TLTPAPEVPSELSVRAPCASLRTLELVN 194
TP + APS S ++ + ++ P + T +P+P + S S +P SLR L
Sbjct: 299 TPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGI 358
Query: 193 SSGSS 179
S S
Sbjct: 359 KSAKS 363
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -3
Query: 391 PFTLSSATPAVAAPSFCLLVKSKEPIALTIFLSLPAKGTLTPAPEVPSE 245
P T S++ V++ S + T+ ++ PA + TP P PS+
Sbjct: 155 PSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASSSATPLPNQPSQ 203
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 553 VLKLGTLAISGIFLVAKAFAVMSWLSLWKRFTLPAAVTLS 434
++ G+L+I IF+ F + SW++L+ T A TLS
Sbjct: 401 IIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438
>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 624 FINRNDYSLDGKLNLFKSPDTSVD 695
F N Y G N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 39 PGNSARGPXQYTNMFGKIVFLLLVALCV 122
PG G Y N + IVF LL+AL +
Sbjct: 567 PGLCPNGSPNYRNRYKLIVFNLLIALLI 594
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,698
Number of Sequences: 5004
Number of extensions: 64119
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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