Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F17
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    40   3e-04
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    27   2.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   3.6  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    26   4.8  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = +2

Query: 20  AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 130
           +GKITGMLLE+  ++LL LL  + AL ++V EA+ ++
Sbjct: 605 SGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 171 SHYRSAPPSVTAEATWLVLLQVPRHRPPRLMTQH 272
           +H  S  P  TA ++WL  L+ P  + PR+++ +
Sbjct: 513 AHNNSTSPFSTAVSSWLNPLRYPSDKSPRVISSY 546


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 418 SARVKIYSWPTNTLSRFSXFRPRSYESLRQ 507
           SAR ++ SW + ++SRFS F   SY+  +Q
Sbjct: 212 SARKEV-SWNSISISRFSIFYRSSYKKFKQ 240


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 335 ERINASGMLAELLGYAFFK-MNLGPMFLNRHVLKYILGRPIRFHDLAXFDP 484
           ER+     L  L+G   ++ + +   F +  V K+ LG P  F DL   DP
Sbjct: 760 ERLRCYEFLGMLIGKCIYEGIQIDAAFASFFVAKW-LGHPSYFDDLTSLDP 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,712
Number of Sequences: 5004
Number of extensions: 40319
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)