Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F17
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717... 44 9e-05
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710... 42 4e-04
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116... 42 7e-04
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943... 42 7e-04
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549... 40 0.002
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 31 1.2
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 30 1.6
11_01_0788 + 6599962-6602700 29 3.8
06_03_0219 - 18227559-18227858,18227864-18228340 28 6.6
>04_04_0435 -
25170348-25170593,25170989-25171189,25171580-25171756,
25172284-25172418,25173131-25173262,25173292-25173369,
25173452-25174108,25174210-25174328,25175897-25176173
Length = 673
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 130
L A K+TGMLLE+ ++L LL S +AL+ KV EAMD++
Sbjct: 605 LEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVL 646
>08_02_0163 +
13470178-13470335,13470635-13470656,13470885-13471055,
13471157-13471363,13471458-13471700
Length = 266
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 20 AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 130
A K+TGMLLE+ ++L L+ S DAL+ KV EAM+++
Sbjct: 204 AAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVL 240
>09_01_0079 -
1159963-1160211,1160303-1160509,1160631-1160801,
1161732-1161869,1162184-1162273,1162354-1162431,
1162510-1163166,1163245-1163363,1164305-1164584
Length = 662
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/37 (51%), Positives = 28/37 (75%)
Frame = +2
Query: 20 AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 130
A K+TGMLLE+ ++L LL S +AL+ KV EAM+++
Sbjct: 598 AAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 634
>03_02_0555 +
9431451-9431688,9432685-9432803,9432886-9433079,
9433174-9433430,9433544-9433650,9433715-9433888,
9434359-9434490,9434776-9434955,9435062-9435265
Length = 534
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 8 HPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 130
HP A KITGMLLEL +++++LL S + L K+ E + L+
Sbjct: 467 HPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLL 507
>06_03_0614 -
22753092-22753349,22754059-22754277,22754712-22754960,
22755186-22755275,22755379-22755456,22755562-22756337,
22757042-22757384
Length = 670
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +2
Query: 20 AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 130
A K+TGMLLEL ++L L+ S D LR KV EAM ++
Sbjct: 603 AYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVL 639
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +3
Query: 171 SHYRSAPPSVTAEATWLVLLQVPRHRPPRLMTQHRCSTPPASAATTRLGRVVLHQRELMP 350
SH R+ PP AEA ++ P +PP+ ++ C S + + LH+ ++ P
Sbjct: 1055 SHLRAMPPKQKAEAEAKKQIRTP--KPPKQAVEYSCDIEGCSMSFRTKRDLSLHKSDICP 1112
Query: 351 -QECWQNYWA 377
+ C + +++
Sbjct: 1113 VKGCGKKFFS 1122
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +2
Query: 275 LFYSPGKRGYYSPRQGRA-TPERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRP 451
LF + G + P E ++ + ++ A F L + R K+ILG
Sbjct: 3339 LFTTVGNNATFQPNPNSVYQTEHLSYFKFVGRVVAKALFDGQLLDVHFTRSFYKHILGVK 3398
Query: 452 IRFHDLAXFDP 484
+ +HD+ DP
Sbjct: 3399 VTYHDIEAVDP 3409
>11_01_0788 + 6599962-6602700
Length = 912
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/32 (31%), Positives = 21/32 (65%)
Frame = +1
Query: 631 ELEVTAHNVYDYVRKYAQHRMLLSQEKALEAI 726
E+ AH+V D + KY+ H ++L +E +++ +
Sbjct: 74 EVRGLAHHVQDVMDKYSYHALMLEEESSMKKV 105
>06_03_0219 - 18227559-18227858,18227864-18228340
Length = 258
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 234 VPRHRPPRLMTQHRCSTPPASAATTRLGR 320
VP H P L++ RC PPA+ A + + R
Sbjct: 60 VPIHLPVALLSLPRCRPPPAACAASTVRR 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,718,599
Number of Sequences: 37544
Number of extensions: 293023
Number of successful extensions: 815
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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