Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F17
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 139 1e-32
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 138 2e-32
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 138 2e-32
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 54 5e-07
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 54 5e-07
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 54 5e-07
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 54 5e-07
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 54 5e-07
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 53 9e-07
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 53 9e-07
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 53 9e-07
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 53 9e-07
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 53 9e-07
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 53 9e-07
AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens ... 50 1e-05
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 48 5e-05
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 48 5e-05
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 48 5e-05
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 48 5e-05
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 48 5e-05
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 48 5e-05
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 48 5e-05
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 48 5e-05
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 48 5e-05
AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protei... 48 5e-05
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 48 5e-05
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 48 5e-05
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 48 5e-05
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 48 5e-05
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 47 8e-05
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 45 2e-04
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 45 2e-04
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 45 2e-04
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 40 0.007
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 40 0.012
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 39 0.021
BC034982-1|AAH34982.1| 909|Homo sapiens HECT domain and ankyrin... 38 0.048
AL590402-2|CAH74024.1| 903|Homo sapiens HECT domain and ankyrin... 38 0.048
AL590402-1|CAH74023.1| 562|Homo sapiens HECT domain and ankyrin... 38 0.048
AL513472-2|CAH71890.1| 903|Homo sapiens HECT domain and ankyrin... 38 0.048
AL513472-1|CAH71889.1| 562|Homo sapiens HECT domain and ankyrin... 38 0.048
AL357315-1|CAI16815.1| 903|Homo sapiens HECT domain and ankyrin... 38 0.048
AB037741-1|BAA92558.1| 567|Homo sapiens KIAA1320 protein protein. 38 0.048
BC028350-1|AAH28350.2| 569|Homo sapiens TTLL7 protein protein. 30 9.7
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 139 bits (336), Expect = 1e-32
Identities = 74/168 (44%), Positives = 98/168 (58%), Gaps = 5/168 (2%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE----AILDLDV 169
++ P FA KITGMLLEL+PAQLL+LLASED+LR +V EAM+LI+ H E +ILDL +
Sbjct: 2429 AMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGL 2488
Query: 170 FSLSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LFYSPGKRGYYSPRQGRATPERIN 346
SE+ LFY PGKRG+Y+PR G+ T R+N
Sbjct: 2489 VDSSEKVQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGKRGFYTPRPGKNTEARLN 2548
Query: 347 ASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVV 490
+ +LG + L P+ LNRHV+K +LGR + +HD A FDPV+
Sbjct: 2549 CFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 2596
Score = 95.1 bits (226), Expect = 2e-19
Identities = 50/127 (39%), Positives = 72/127 (56%)
Frame = +1
Query: 346 CLRNVGRIIGLCLLQNEPWPNVP*SARVKIYSWPTNTLSRFSXFRPRSYESLRQLVVDAE 525
C RN+GRI+GLCLLQNE P +K+ F+ F P YESLRQL++ ++
Sbjct: 2549 CFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQ 2608
Query: 526 TGDSHSLFAALDLNFSXXXXXXXXXXXXXXXXXXRELEVTAHNVYDYVRKYAQHRMLLSQ 705
+ D+ ++F+A+DL F+ + VT NVY+YVRKYA+HRML+
Sbjct: 2609 SSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 2668
Query: 706 EKALEAI 726
E+ L A+
Sbjct: 2669 EQPLHAM 2675
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 138 bits (333), Expect = 2e-32
Identities = 74/169 (43%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE----AILDLDV 169
++ P FA KITGMLLEL+PAQLL+LLASED+LR +V EAM+LI+ H E +ILDL +
Sbjct: 2406 AMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGL 2465
Query: 170 FSLSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LFYSPGKRGYYSPRQGRATPERI 343
SE+ LFY PGKRG+Y+PR G+ T R+
Sbjct: 2466 VDSSEKVQQENRKRHGSSRSVVNMDLDDTDDGDDNAPLFYQPGKRGFYTPRPGKNTEARL 2525
Query: 344 NASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVV 490
N + +LG + L P+ LNRHV+K +LGR + +HD A FDPV+
Sbjct: 2526 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 2574
Score = 95.1 bits (226), Expect = 2e-19
Identities = 50/127 (39%), Positives = 72/127 (56%)
Frame = +1
Query: 346 CLRNVGRIIGLCLLQNEPWPNVP*SARVKIYSWPTNTLSRFSXFRPRSYESLRQLVVDAE 525
C RN+GRI+GLCLLQNE P +K+ F+ F P YESLRQL++ ++
Sbjct: 2527 CFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQ 2586
Query: 526 TGDSHSLFAALDLNFSXXXXXXXXXXXXXXXXXXRELEVTAHNVYDYVRKYAQHRMLLSQ 705
+ D+ ++F+A+DL F+ + VT NVY+YVRKYA+HRML+
Sbjct: 2587 SSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 2646
Query: 706 EKALEAI 726
E+ L A+
Sbjct: 2647 EQPLHAM 2653
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 138 bits (333), Expect = 2e-32
Identities = 74/169 (43%), Positives = 98/169 (57%), Gaps = 6/169 (3%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE----AILDLDV 169
++ P FA KITGMLLEL+PAQLL+LLASED+LR +V EAM+LI+ H E +ILDL +
Sbjct: 2407 AMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGL 2466
Query: 170 FSLSERXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LFYSPGKRGYYSPRQGRATPERI 343
SE+ LFY PGKRG+Y+PR G+ T R+
Sbjct: 2467 VDSSEKVQQENRKRHGSSRSVVDMDLDDTDDGDDNAPLFYQPGKRGFYTPRPGKNTEARL 2526
Query: 344 NASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVV 490
N + +LG + L P+ LNRHV+K +LGR + +HD A FDPV+
Sbjct: 2527 NCFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVM 2575
Score = 95.1 bits (226), Expect = 2e-19
Identities = 50/127 (39%), Positives = 72/127 (56%)
Frame = +1
Query: 346 CLRNVGRIIGLCLLQNEPWPNVP*SARVKIYSWPTNTLSRFSXFRPRSYESLRQLVVDAE 525
C RN+GRI+GLCLLQNE P +K+ F+ F P YESLRQL++ ++
Sbjct: 2528 CFRNIGRILGLCLLQNELCPITLNRHVIKVLLGRKVNWHDFAFFDPVMYESLRQLILASQ 2587
Query: 526 TGDSHSLFAALDLNFSXXXXXXXXXXXXXXXXXXRELEVTAHNVYDYVRKYAQHRMLLSQ 705
+ D+ ++F+A+DL F+ + VT NVY+YVRKYA+HRML+
Sbjct: 2588 SSDADAVFSAMDLAFAIDLCKEEGGGQVELIPNGVNIPVTPQNVYEYVRKYAEHRMLVVA 2647
Query: 706 EKALEAI 726
E+ L A+
Sbjct: 2648 EQPLHAM 2654
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 54.0 bits (124), Expect = 5e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 567 AMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 54.0 bits (124), Expect = 5e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 567 AMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 54.0 bits (124), Expect = 5e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 567 AMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 54.0 bits (124), Expect = 5e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 567 AMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 54.0 bits (124), Expect = 5e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 567 AMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 53.2 bits (122), Expect = 9e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 458 AMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 506
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 53.2 bits (122), Expect = 9e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 569 AMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 617
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 53.2 bits (122), Expect = 9e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 572 AMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 53.2 bits (122), Expect = 9e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 572 AMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 53.2 bits (122), Expect = 9e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 572 AMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 53.2 bits (122), Expect = 9e-07
Identities = 24/49 (48%), Positives = 37/49 (75%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 572 AMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ45986 fis, clone PUAEN2000594, highly similar
to Polyadenylate-binding protein 1. ).
Length = 146
Score = 49.6 bits (113), Expect = 1e-05
Identities = 22/49 (44%), Positives = 36/49 (73%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 148
++HPT AGKITG+LLE+ ++LL +L S ++L KV EA+ ++ H ++
Sbjct: 82 AMHPTLAGKITGVLLEIDNSELLHMLKSPESLHSKVDEAVAVLQAHQAK 130
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 597 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 597 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 568 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 613
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 597 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 552 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 597
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 347 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 392
>AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 194
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 135 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 180
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 581 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 597 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 552 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 597
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 47.6 bits (108), Expect = 5e-05
Identities = 22/46 (47%), Positives = 33/46 (71%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 295 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 340
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 46.8 bits (106), Expect = 8e-05
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = +2
Query: 2 SLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
++H AGKITGMLLE+ ++LL +L S ++LR KV EA ++ H
Sbjct: 308 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAAAVLQAH 353
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
+H AGKITGMLLE+ ++LL++L S ++L K+ EA+ ++ H
Sbjct: 113 VHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAH 157
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
+H AGKITGMLLE+ ++LL++L S ++L K+ EA+ ++ H
Sbjct: 559 VHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAH 603
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 45.2 bits (102), Expect = 2e-04
Identities = 20/45 (44%), Positives = 32/45 (71%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 139
+H AGKITGMLLE+ ++LL++L S ++L K+ EA+ ++ H
Sbjct: 559 VHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAH 603
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 40.3 bits (90), Expect = 0.007
Identities = 18/38 (47%), Positives = 28/38 (73%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREA 118
+H AGKITGMLLE+ ++LL++L S ++L K R++
Sbjct: 113 VHTQLAGKITGMLLEIDNSELLLMLESPESLHAKKRKS 150
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 39.5 bits (88), Expect = 0.012
Identities = 17/35 (48%), Positives = 26/35 (74%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKV 109
+H AGKITGMLLE+ ++LL++L S ++L K+
Sbjct: 113 VHTQLAGKITGMLLEIDNSELLLMLESPESLHAKI 147
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 38.7 bits (86), Expect = 0.021
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 5 LHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVR 112
+H AGKITGMLLE+ ++LL++L S ++L K +
Sbjct: 94 VHTQLAGKITGMLLEIDNSELLLMLESPESLHAKAQ 129
>BC034982-1|AAH34982.1| 909|Homo sapiens HECT domain and ankyrin
repeat containing, E3 ubiquitin protein ligase 1
protein.
Length = 909
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 635 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 689
>AL590402-2|CAH74024.1| 903|Homo sapiens HECT domain and ankyrin
repeat containing, E3 ubiquitin protein ligase 1
protein.
Length = 903
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 629 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 683
>AL590402-1|CAH74023.1| 562|Homo sapiens HECT domain and ankyrin
repeat containing, E3 ubiquitin protein ligase 1
protein.
Length = 562
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 288 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 342
>AL513472-2|CAH71890.1| 903|Homo sapiens HECT domain and ankyrin
repeat containing, E3 ubiquitin protein ligase 1
protein.
Length = 903
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 629 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 683
>AL513472-1|CAH71889.1| 562|Homo sapiens HECT domain and ankyrin
repeat containing, E3 ubiquitin protein ligase 1
protein.
Length = 562
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 288 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 342
>AL357315-1|CAI16815.1| 903|Homo sapiens HECT domain and ankyrin
repeat containing, E3 ubiquitin protein ligase 1
protein.
Length = 903
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 629 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 683
>AB037741-1|BAA92558.1| 567|Homo sapiens KIAA1320 protein protein.
Length = 567
Score = 37.5 bits (83), Expect = 0.048
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 332 PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
P+ +N ++LG A L ++ R K+ILG P+ + D+A DP K
Sbjct: 293 PDHLNYFRFAGQILGLALNHRQLVNIYFTRSFYKHILGIPVNYQDVASIDPEYAK 347
>BC028350-1|AAH28350.2| 569|Homo sapiens TTLL7 protein protein.
Length = 569
Score = 29.9 bits (64), Expect = 9.7
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 310 RVVAALAGGVEQRCCVISRGGRWRGTCSSTSHVASAVTDG 191
R V + +C + SRGGR RG+C + H+ + G
Sbjct: 23 RAVGGRRRAPDHQCRLPSRGGRPRGSCEAREHLGDRLQRG 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,357,692
Number of Sequences: 237096
Number of extensions: 1535868
Number of successful extensions: 2921
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 2813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2912
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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