Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F17
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    46   2e-05
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    40   0.001
U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    40   0.002
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    40   0.002
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    40   0.002
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    40   0.002
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    32   0.36 
AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical ...    28   5.9  

>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +2

Query: 302  YYSPRQGRATPERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFD 481
            +Y P+ G   P R+ A   +  ++G    + ++ P+  +RH+  YIL  PI + DL  +D
Sbjct: 2666 FYVPKIGNGAPMRLAAYRTVGRIMGICLSQGDIFPLRFSRHIFSYILKLPICWLDLGFYD 2725

Query: 482  PVV 490
            PV+
Sbjct: 2726 PVL 2728


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 20/63 (31%), Positives = 35/63 (55%)
 Frame = +2

Query: 302  YYSPRQGRATPERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFD 481
            +Y P+ G   P R+ A   +  ++G    + ++ P+  +RH+  YIL  PI + DL  +D
Sbjct: 2666 FYVPKIGNGAPMRLAAYRTVGRIMGICLSQGDIFPLRFSRHIFSYILKLPICWLDLGFYD 2725

Query: 482  PVV 490
            PV+
Sbjct: 2726 PVL 2728


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +2

Query: 20  AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSEA 151
           AGKITGM+LE+  A+L+++L   +  R KV EA  ++    S A
Sbjct: 639 AGKITGMMLEIDNAELIMMLQDAELFRSKVEEAFGVLTNAQSAA 682


>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 20  AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 133
           AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 604 AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 641


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 20  AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 133
           AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 544 AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 581


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 20  AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 133
           AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 541 AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 578


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 17/38 (44%), Positives = 27/38 (71%)
 Frame = +2

Query: 20  AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 133
           AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 604 AGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 641


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 332  PERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFDPVVMK 496
            PE ++    +  L+  + F+      +  R   K+IL  P+R+ DL   DP   K
Sbjct: 3904 PEHLDYFKFVGRLIAKSVFEHKYLDCYFTRAFYKHILNLPVRYQDLESEDPAFFK 3958


>AC084161-4|AAK29730.3|  724|Caenorhabditis elegans Hypothetical
           protein Y92H12A.2 protein.
          Length = 724

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/58 (24%), Positives = 24/58 (41%)
 Frame = +2

Query: 308 SPRQGRATPERINASGMLAELLGYAFFKMNLGPMFLNRHVLKYILGRPIRFHDLAXFD 481
           +P      PE ++    +  ++G A +   L   F  R   K +LG+ I   D+   D
Sbjct: 468 NPHSEACNPEHLSYFHFIGRIIGMAIYHGKLLDAFFIRPFYKMMLGKKITLFDMESVD 525


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,948,731
Number of Sequences: 27780
Number of extensions: 233540
Number of successful extensions: 510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)