Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F14
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc... 34 0.025
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet... 29 0.70
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 28 1.6
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 5.0
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.6
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 6.6
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.7
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 25 8.7
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 25 8.7
>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 167
Score = 33.9 bits (74), Expect = 0.025
Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Frame = -2
Query: 453 RDKIMSKAVITRNMSTDQRASISAKEKLKKAVKEYGATVIVFHVSISLLSLGGCYLLVSS 274
R I S + I + S R +I+ +++K+ K+YG + ++ IS+L ++LV +
Sbjct: 29 RRSISSSSSIPPSSSPPPRLTIT--QRVKELTKKYGWWSLGVYIGISVLDFSASFVLVRT 86
Query: 273 -GVDLVALL---------KYLN--ISEGTIL---KAAGSNAGT-FVVAYGVHKLFAPLRI 142
G + + L +Y N I E T +A S+ T AYG+HK R+
Sbjct: 87 LGAERIGYLEHSILNSIRRYFNWEIPESTASGEPEAYHSSIWTELAFAYGIHKALVVARV 146
Query: 141 GITLTATPFIVRYLR 97
+T P + + R
Sbjct: 147 PLTAAIVPPLAKRFR 161
>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
acetyltransferase subunit |Schizosaccharomyces pombe|chr
1|||Manual
Length = 544
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = -2
Query: 687 KCLFI-LKSRPTTCLDPHMNKYDCHGAVSLSSSMQS---NVPRPFSGNHT 550
KC+ I +++RP CLD H+++ +G L +QS +V R + HT
Sbjct: 211 KCVGITIETRPDYCLDQHLDEMLRYGCTRLEIGVQSVYEDVARDTNRGHT 260
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 27.9 bits (59), Expect = 1.6
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = -2
Query: 564 SGNHTHLNMPGSQWGQGHKYLSDHLHSAHYLTLRNEYR---DKIMSKAVITRNMSTDQRA 394
+GNH ++N+P + Q H + + S ++ L R K ++K V ++++S
Sbjct: 300 AGNHMYINIPSLSYWQIHPFTIASVPSDDFIELFVAVRAGFTKRLAKKVSSKSLSDVSDI 359
Query: 393 SISAKEKLKK 364
+IS EK++K
Sbjct: 360 NIS-DEKIEK 368
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 417 NMSTDQRASISAKEKLKKAVKEYGAT 340
N STD RASI++ L A Y T
Sbjct: 590 NFSTDSRASINSSYLLDSAASNYSGT 615
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 261 VALLKYLNISEGTILKAAGSN 199
+A Y NISEGT +GSN
Sbjct: 57 IASTSYYNISEGTYCHVSGSN 77
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 584 LCIEEERLTAPWQSYLFICGSRQVVGRDFKMNKH--LIIFLXVCYI 715
LCI+ ++L W+S L I ++ ++ N+ I FL +C I
Sbjct: 127 LCIQIKKLLGKWESKLKIIKFNKLAKYVYEGNQFFLFIFFLSICQI 172
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 330 FHVSISLLSLGGCYLLVSSG 271
F VSIS+ SLG C LV G
Sbjct: 130 FGVSISVSSLGSCVFLVGFG 149
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -2
Query: 660 PTTCLDPHMNKYDCHGAVSLSSSMQSNVPRPFSGNHTHLN 541
P++ + +N S S + Q NV PF+ +H H N
Sbjct: 389 PSSAIKQELNLQPQILVSSASKNFQPNVTPPFAVHHDHFN 428
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 5 FFFSIYLFIYTYMTNYFPS 61
F F +Y+FI +++ N+FPS
Sbjct: 262 FRFFLYVFIASFIWNWFPS 280
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,185
Number of Sequences: 5004
Number of extensions: 62517
Number of successful extensions: 171
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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