Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F14
(748 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706 69 5e-12
09_06_0129 - 21028528-21028575,21029559-21029654,21029989-210300... 39 2e-05
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609... 31 0.97
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 31 1.3
05_03_0394 - 13440871-13441098,13441197-13441394,13441491-134415... 30 2.2
07_03_0036 + 12694304-12694408,12694551-12694652,12694867-126949... 29 5.2
06_03_0727 + 23909924-23910091,23911054-23911185,23911533-239117... 29 5.2
02_01_0404 - 2945611-2948802 29 5.2
12_02_0339 - 17721664-17722407,17722921-17723556 28 6.9
01_06_1478 - 37648781-37649113,37649200-37649455,37649954-376500... 28 6.9
04_04_0236 + 23825368-23825763,23826229-23828667 28 9.1
>04_03_0887 + 20557974-20558186,20558265-20558456,20558548-20558706
Length = 187
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/99 (35%), Positives = 55/99 (55%)
Frame = -2
Query: 387 SAKEKLKKAVKEYGATVIVFHVSISLLSLGGCYLLVSSGVDLVALLKYLNISEGTILKAA 208
S E+ K+ + +YG + +++SL+S CYLLVS+GVD+ LL + I+ G
Sbjct: 88 SRTEQAKELLAKYGGAYLATSITLSLISFTLCYLLVSAGVDVQDLLGKVGIATG----ET 143
Query: 207 GSNAGTFVVAYGVHKLFAPLRIGITLTATPFIVRYLRNI 91
G GTF +AY HK +P+R T+ TP + ++ I
Sbjct: 144 GGKVGTFALAYAAHKAASPIRFPPTVALTPVVASWIGRI 182
>09_06_0129 -
21028528-21028575,21029559-21029654,21029989-21030070,
21030394-21030472,21030946-21031042,21031506-21031593,
21033326-21033687
Length = 283
Score = 39.1 bits (87), Expect(2) = 2e-05
Identities = 15/48 (31%), Positives = 31/48 (64%)
Frame = -2
Query: 375 KLKKAVKEYGATVIVFHVSISLLSLGGCYLLVSSGVDLVALLKYLNIS 232
++K+ +++YG I H+S+S S+ G Y+ + + VD+ A+ + + IS
Sbjct: 6 RMKELMRKYGKVAIGVHLSVSCASITGLYVAIDNNVDVDAIFRRIGIS 53
Score = 26.6 bits (56), Expect(2) = 2e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = -2
Query: 204 SNAGTFVVAYGVHKLFAPLRIGITLTATPFIVR 106
S+ G +A +K P+R+ +TL TP + R
Sbjct: 89 SSGGALALALMCNKALLPVRVPVTLALTPPVAR 121
>07_03_1631 -
28258897-28259984,28260518-28260772,28260861-28260975,
28261097-28261149,28261238-28261498,28262122-28262175,
28262294-28262536,28262830-28263073,28263877-28263909
Length = 781
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 432 LCSLFCLYTHF*VLNNEHYADDQISTYVPDPIGNL 536
L SL C + F +L N+ AD+++STY +G +
Sbjct: 98 LYSLLCRHAKFSLLPNQQSADEELSTYYQPGVGGI 132
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 690 IKCL-FILKSRPTTCLDPHMNKYDCHGAVSLSSSMQS---NVPRPFSGNHT 550
+KC+ +++RP CL PH+ + +G L +QS +V R + HT
Sbjct: 239 VKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHT 289
>05_03_0394 -
13440871-13441098,13441197-13441394,13441491-13441594,
13441687-13442551,13442677-13443045,13443372-13443533,
13443838-13444056,13444138-13444656,13444742-13444819,
13446041-13446163
Length = 954
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 660 PTTCLDPHMNKYDCHGAVSLSSSMQSNVPRPFSGNHT 550
P T +P +K DC G++SL+ S + R +GN T
Sbjct: 669 PATASNPSRSKSDCSGSLSLNHSSELPSSRIQTGNST 705
>07_03_0036 +
12694304-12694408,12694551-12694652,12694867-12694947,
12696475-12696525,12697308-12697473,12698759-12698877,
12698975-12699073,12699684-12699764,12699845-12699927,
12701177-12701402,12704272-12704439,12706408-12706800
Length = 557
Score = 28.7 bits (61), Expect = 5.2
Identities = 24/74 (32%), Positives = 34/74 (45%)
Frame = -2
Query: 390 ISAKEKLKKAVKEYGATVIVFHVSISLLSLGGCYLLVSSGVDLVALLKYLNISEGTILKA 211
+ A E K+A++E + ++ +LGG LV SGV LV I G L
Sbjct: 439 MEALESEKRAIEERKRLKEAGVIGSTMDALGGAASLVGSGVGLVG----TGIVGGVGLVG 494
Query: 210 AGSNAGTFVVAYGV 169
+G AG +V GV
Sbjct: 495 SGIGAGVGLVGSGV 508
>06_03_0727 +
23909924-23910091,23911054-23911185,23911533-23911797,
23911893-23911909
Length = 193
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 498 DHLHSAHYLTLR--NEYRDKIMSKAVITRNMSTDQRASISAKEKLKKAVK 355
D HSAHYL LR N+ +D + A M R +++ E LKK+V+
Sbjct: 116 DEEHSAHYLRLRFENQLQDAMEGMAAGGEEM----RVALARMETLKKSVQ 161
>02_01_0404 - 2945611-2948802
Length = 1063
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -2
Query: 489 HSAHYLTLRNE--YRDKIMSKAVITRNMSTDQRASISAKEKLKKAVKEYGATVIVFHVSI 316
+ A + T N Y++ + ++ R+ ++Q ASIS K KKA+ + VF I
Sbjct: 653 NGAQFSTFTNSSFYKNPKLCGHILHRSCRSEQAASISTKSHNKKAI--FATAFGVFFGGI 710
Query: 315 SLLSLGGCYLLVSSGVDLV 259
++L L G D +
Sbjct: 711 AVLLFLAYLLATVKGTDCI 729
>12_02_0339 - 17721664-17722407,17722921-17723556
Length = 459
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 50 YFPSPALMLRFKKPIFLKYLTIKGVAVNVIPILNGANS 163
YF SP ++ +FL LT+ V+P G N+
Sbjct: 422 YFRSPWSLMSLAAAVFLLVLTVMQTVYTVLPFYQGGNN 459
>01_06_1478 -
37648781-37649113,37649200-37649455,37649954-37650066,
37650312-37650689,37650822-37650999,37651429-37651565,
37651993-37652155,37652531-37652688,37652819-37652923,
37653106-37653253,37653816-37654132
Length = 761
Score = 28.3 bits (60), Expect = 6.9
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Frame = -2
Query: 612 AVSLSSSMQSNVPRPFSGNHTHL-NMPGS----QWGQGHKYLSDHLHSAHYLTLRNEYRD 448
A S +S S H H+ ++ GS +W + S H SA++ +
Sbjct: 419 AASQRASQWHRPSEDSSSAHAHIFDIDGSVYLRKWMTSPSWTSSH--SANFWRNSSVKHG 476
Query: 447 KIMSKAVITRNMSTDQRASISAKEKLKKAVKEYGATVI 334
I+SK+++ + + ++A ++ KEK K V+ AT++
Sbjct: 477 VILSKSLVVADKNLVEKAMVACKEK-SKIVERTQATIV 513
>04_04_0236 + 23825368-23825763,23826229-23828667
Length = 944
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 242 RYFNNATRSTP-LDTSR*HPPKESNEMLT*KTMTVAPYSLTA 364
R FN TR P + + R PP ++ + + KT + + YS+ A
Sbjct: 301 RPFNAKTRLNPKIHSGRGRPPNQNKDFMVKKTFSQSNYSIEA 342
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,238,605
Number of Sequences: 37544
Number of extensions: 373392
Number of successful extensions: 1036
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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