Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F12
(231 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 92 1e-20
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 92 1e-20
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 26 0.58
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 0.77
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 25 1.3
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 24 2.3
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 24 3.1
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 4.1
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 23 4.1
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 23 5.4
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 22 9.5
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 22 9.5
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 22 9.5
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 22 9.5
>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 91.9 bits (218), Expect = 1e-20
Identities = 38/73 (52%), Positives = 60/73 (82%)
Frame = +1
Query: 1 RKKQKNIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDI 180
RKK KN+ H+GN++++++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+
Sbjct: 92 RKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDV 151
Query: 181 IDDINSGALTIDE 219
+I++G + I +
Sbjct: 152 QKEIDNGEIEIPQ 164
>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
Length = 165
Score = 91.9 bits (218), Expect = 1e-20
Identities = 38/73 (52%), Positives = 60/73 (82%)
Frame = +1
Query: 1 RKKQKNIKHNGNITMEDVIGIAKIMRPRSMARYLSGSVKEILGTAQSVGCTVEGRAPHDI 180
RKK KN+ H+GN++++++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ PHD+
Sbjct: 92 RKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNPHDV 151
Query: 181 IDDINSGALTIDE 219
+I++G + I +
Sbjct: 152 QKEIDNGEIEIPQ 164
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 26.2 bits (55), Expect = 0.58
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -3
Query: 88 LNEDALSWQCQ*HLPL*YFHCV*CSSAS 5
L EDA +WQCQ YF V CS S
Sbjct: 652 LMEDAENWQCQHCKAFSYFSQVACSCKS 679
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 0.77
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = -3
Query: 178 CHGGPCPP--QCIQQIVLC 128
CH GPCPP +++ LC
Sbjct: 298 CHPGPCPPCTATVEKFCLC 316
Score = 23.0 bits (47), Expect = 5.4
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -3
Query: 178 CHGGPCPPQCIQ 143
CH GPC P+C++
Sbjct: 604 CHRGPC-PRCLE 614
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 1.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 230 LIVYSSIVRAPLLISSMMSWGALPSTVHPTDCAVPRISF 114
LIV I+R PL I S+ W + P P++SF
Sbjct: 62 LIVVVMILRVPLCIISVTLWFLWSCFLKPILSIQPKLSF 100
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 24.2 bits (50), Expect = 2.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 96 LPLRLSKRNPWHSTICWMHCGGQGPP*HHR 185
+PLRL+ PW+ + + H G HH+
Sbjct: 765 IPLRLAGEKPWY--VEYSHTSGLNKVSHHK 792
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 134 HNLLDALWRAGPPMT-SSMIST 196
HNL LWR PP T S++++T
Sbjct: 368 HNLWMQLWRILPPNTLSTLVNT 389
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.4 bits (48), Expect = 4.1
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 150 HCGGQGPP 173
HCGGQ PP
Sbjct: 709 HCGGQAPP 716
>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 335
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -3
Query: 154 QCIQQIVLCQGFLLLSLRGNVP--LNEDALSWQCQ 56
+ + +I L G+LL SL NVP L L CQ
Sbjct: 21 EALDEIFLNVGYLLRSLLANVPNALYHSQLQAACQ 55
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 30 WKYHNGRCHWHCQDNASSFNGTL-PLRLSKRNP 125
WK H +C +N ++F G PL + +P
Sbjct: 29 WKIHQSQCETVNDNNTTTFKGVKEPLNPPEPSP 61
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/36 (22%), Positives = 18/36 (50%)
Frame = +1
Query: 124 LGTAQSVGCTVEGRAPHDIIDDINSGALTIDE*TMS 231
+ + GC V P +ID + G++ + + ++S
Sbjct: 467 IAKCSNFGCQVMNHVPMIVIDQCDGGSIYLSKSSLS 502
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 164 LPSTVHPTDCAVPRISFT 111
LPST+HP A+ ++ T
Sbjct: 188 LPSTLHPHGAALMEVTMT 205
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/11 (63%), Positives = 11/11 (100%)
Frame = +1
Query: 187 DINSGALTIDE 219
D+NSG++TID+
Sbjct: 635 DVNSGSITIDD 645
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 22.2 bits (45), Expect = 9.5
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = +3
Query: 30 WKYHNGRCHWHC 65
W+ GRC W C
Sbjct: 406 WEVMTGRCVWKC 417
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,014,903
Number of Sequences: 5004
Number of extensions: 18058
Number of successful extensions: 44
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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