Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F11
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1536 - 27537394-27537576,27537837-27538073,27538164-275390...    31   0.65 
01_01_0662 - 5052390-5053022,5053182-5053319,5053429-5053656,505...    31   1.1  
06_03_1126 + 27805982-27806475,27806617-27807202                       30   2.0  
05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432...    29   4.6  
12_01_0089 - 707260-707317,707626-708050,708663-709621,710223-71...    28   8.0  
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348...    28   8.0  

>07_03_1536 -
           27537394-27537576,27537837-27538073,27538164-27539078,
           27540028-27540282,27540872-27540940,27542743-27542805,
           27542833-27542901,27542962-27542997
          Length = 608

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 346 APPHPLTICIGGLDPPNAIGKGSA*MHSPRQKKKTLVNIKVH 221
           APP P+++  GG++PP  +      M +P Q     +N +V+
Sbjct: 134 APPPPMSVASGGVEPPPQVATFQPVMQTPPQVAFASLNSRVY 175


>01_01_0662 -
           5052390-5053022,5053182-5053319,5053429-5053656,
           5053736-5054035,5054568-5054636
          Length = 455

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/58 (32%), Positives = 30/58 (51%)
 Frame = +2

Query: 290 NCIGRIKSPNANGKGVWRGVFTPVWDSSAGNIH*TPRSSQPHLGGRDCGSMHRVAPCD 463
           +C  +++ P+ NG+G  +G    +W SS+G+     R S+   GG   G  HR A  D
Sbjct: 21  DCKEKLQVPSVNGRGGGKGRKWKLWRSSSGDHGSLWRGSR---GGGGGGGHHRSASSD 75


>06_03_1126 + 27805982-27806475,27806617-27807202
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 28/86 (32%), Positives = 35/86 (40%)
 Frame = +2

Query: 362 WDSSAGNIH*TPRSSQPHLGGRDCGSMHRVAPCDRPNRPRPLH*SVGVEGEGPPLSPFLR 541
           W  + G++    RSS  H GG   G    +AP D  +          V G GPP +  LR
Sbjct: 5   WRCTMGSVLPRQRSSDHHAGGGGGGGRQSLAPDDFRD----------VFG-GPPRTVLLR 53

Query: 542 RELLSSGQRCIESTHSPXMNYLQA*H 619
                 G+   ES HSP M   Q  H
Sbjct: 54  S--FYGGEAAAESYHSPAMAQQQHHH 77


>05_04_0080 -
           17742425-17742578,17742855-17743038,17743202-17743273,
           17743343-17743469,17743915-17744135,17744234-17744387
          Length = 303

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +1

Query: 448 RRPLRQAQQTSSS---TLVRWG*GGRPTS*PISQ 540
           RR  R + +T SS   TLV WG GGR +S P  Q
Sbjct: 34  RRRGRNSDETGSSDPSTLVEWGKGGRSSSAPEHQ 67


>12_01_0089 -
           707260-707317,707626-708050,708663-709621,710223-710408,
           710502-710604,710701-710883,710932-711012,711072-711164,
           711650-711832,713751-713966
          Length = 828

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 501 GLRGKAHLLAHFSEENYYHPGRGVLSQPIPP---I*TIYKPD 617
           G RGK H L+H + +  +H GR  +S  + P   +  IY PD
Sbjct: 680 GGRGKTHFLSH-NHQRPHHYGRADMSADLTPSEELRHIYDPD 720


>10_06_0170 +
           11431540-11432259,11434552-11434644,11434739-11434806,
           11434873-11435011,11435179-11435229,11435600-11435675,
           11436216-11436274
          Length = 401

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 428 PAPLNAAGCSGGSSG--YFRRLSPTL 357
           P PL+AAG  GG     + +RLSPTL
Sbjct: 6   PPPLSAAGAGGGGGRRRWQKRLSPTL 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,624,218
Number of Sequences: 37544
Number of extensions: 570186
Number of successful extensions: 1265
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)