Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F11
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    33   0.95 

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 33.1 bits (72), Expect = 0.95
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +3

Query: 9   FCHSKSYVYTYIYVY-----CCNVYFWNALIKVNLL*HTGRGNCIKLFL*V*YVLQMKFS 173
           + H   YVYTYIYVY     C +++     + + L  +T    C  + + V Y     + 
Sbjct: 48  YTHKHMYVYTYIYVYTYTYVCVHIHI---CVHIYLCMYTHTYMCAHIHMCV-YTYIYVYI 103

Query: 174 YMEETI*VMINYFDSMWTLIFTSV 245
           Y    I V IN + S++  I+T +
Sbjct: 104 YTHIHICVHINMYVSIYVYIYTCI 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,814,915
Number of Sequences: 237096
Number of extensions: 3186293
Number of successful extensions: 7953
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7939
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)