Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F07
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    29   0.49 
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    27   2.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   8.0  

>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 549 SYLVKI*SIPPRTVLKWGTLAISGIFLVAKAFAVMSWXSLWKRFTLPAAVTLS 391
           S   K+  I  R ++ +G+L+I  IF+    F + SW +L+   T   A TLS
Sbjct: 388 SLFFKVLKIHRRPIIVFGSLSI--IFIHIYCFKITSWVNLYGWITCTIARTLS 438


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 44  CSGRSSFYCLSLCASASKP 100
           C G SSFYCLS+     KP
Sbjct: 132 CQGYSSFYCLSIFDRYYKP 150


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 149  SVYM*YSKTRFADNQVSALTPTHRATSNKKTIFPNMFGTESSLVRIRS 6
            S+YM Y      D+  SALT  H      +T FP +   ES+  +I+S
Sbjct: 1081 SLYMIYRLETLRDSS-SALTLMHYFDEIIRTRFPELLQAESTFKKIQS 1127


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 320 AGVALDNVNGHGVSLTDTHIPG 385
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,352,921
Number of Sequences: 5004
Number of extensions: 45997
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)