Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F07
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    35   0.041
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197...    29   3.5  
12_02_0412 - 18799217-18801061                                         28   4.7  
04_02_0006 + 8455219-8457469,8457560-8457924                           28   6.2  
12_02_0591 + 20864861-20867329                                         27   8.2  
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315...    27   8.2  
07_03_0719 + 20920331-20920535,20920588-20920763,20920901-209211...    27   8.2  

>11_06_0458 +
           23808402-23808469,23808800-23809684,23810011-23811961,
           23812210-23812285,23813064-23813072,23813243-23813335,
           23813578-23813581,23813780-23814703,23814926-23815909,
           23816073-23816118,23816376-23816951,23817253-23817798,
           23817820-23818416
          Length = 2252

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
 Frame = +1

Query: 7   LRIRTRLLSVPNMFGKIVFLLLVAL--CVGVKADT*LSANLVLLYHI*TELCSLSPQDAH 180
           LRIR   +S+P+  G++ FL+++ L  C+G+     L A++V+L H+    C +     H
Sbjct: 647 LRIRASNISLPDQIGELQFLVILDLLNCIGISK---LPASIVILRHL---KCLV----VH 696

Query: 181 XXXLTLNSDGTSGXXELKYPLLVTTEYS 264
              L    DG      L+Y  LV  +YS
Sbjct: 697 RVEL---PDGVGNLQALEYMSLVVVDYS 721


>02_04_0519 +
           23619084-23619198,23619468-23619559,23619655-23619735,
           23620426-23620501,23620674-23620696
          Length = 128

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 498 GTLAISGIFLVAKAFAVMSWXSLWKRFTLPAAV 400
           G LA+  IF +     ++ W S+W+ FT  A +
Sbjct: 63  GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 529 VYSATDSVEVGYISDIWHISGGESLRCDVV 440
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -1

Query: 420 FTLPAAVTLSPNPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIALTIF 256
           F  P +V+L  N G+C ++ +   P   SS  PA    +  LL+K    I + +F
Sbjct: 437 FQRPNSVSLEGNKGLCANIHILNLPICPSS--PAKTKNNKRLLLKVIPSITIALF 489


>12_02_0591 + 20864861-20867329
          Length = 822

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 412 AGSCHLVSEPGDVCIRETY 356
           AG CHL  EPG V +R  +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317


>08_02_1455 +
           27230134-27231110,27231195-27231327,27231417-27231501,
           27233372-27233571
          Length = 464

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = -1

Query: 387 NPGMCVSVRLTPWPFTLSSATPAVAAPSFCLLVKSKEPIA 268
           +PG    V  +P P  LSSA  A AA S+  L  S  P A
Sbjct: 17  SPGQPPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPA 56


>07_03_0719 +
           20920331-20920535,20920588-20920763,20920901-20921111,
           20921240-20921477,20921613-20921763,20921878-20922186
          Length = 429

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 556 APILSCENIVYSATDSVEVGYISDIWHI--SGGESLRCDVVVIVVEEIHFAGSCHL 395
           AP+L C   V   T S+E+  +  +W I  SG E    D   I     +F+ +C L
Sbjct: 62  APMLHCPGTVSVPTMSMEMEQVLKLWRIEESGSEFSLYDFDQIADATDNFSDACKL 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,791
Number of Sequences: 37544
Number of extensions: 340731
Number of successful extensions: 897
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)