Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F06
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 265 3e-72
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 184 1e-47
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 175 3e-45
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 154 9e-39
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 148 6e-37
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 120 2e-28
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 77 2e-15
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 76 5e-15
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 76 5e-15
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 71 2e-13
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 69 4e-13
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 67 2e-12
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 66 4e-12
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 64 1e-11
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 60 4e-10
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 58 8e-10
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 58 1e-09
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 45 8e-06
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 33 0.035
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.57
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 28 1.3
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 3.1
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy... 26 5.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 5.3
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 7.1
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 7.1
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 265 bits (650), Expect = 3e-72
Identities = 122/149 (81%), Positives = 133/149 (89%)
Frame = +1
Query: 196 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 375
M TIKCVVVGDGAVGKTCLLISYTTNKFPS+YVPTVFDNYAVTVMIG EPYTLGLFDTAG
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAG 60
Query: 376 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLR 555
QEDYDRLRPLSYPQTDVFLVCFSV SP+SFENVKEKW PE+ HH P L+VGTQIDLR
Sbjct: 61 QEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLR 120
Query: 556 DDPATMEKLAKIKQKPVSLEQGEKLAKEL 642
DDP+ +KLA+ Q P++ EQGE+LA+EL
Sbjct: 121 DDPSVQQKLARQHQHPLTHEQGERLAREL 149
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 184 bits (447), Expect = 1e-47
Identities = 80/145 (55%), Positives = 107/145 (73%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 387
K V+VGDGA GKTCLLI ++ FP YVPTVF+NY V + G L L+DTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 388 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPA 567
DRLRPLSYP + V L+CFSV +P S +NV+EKW+ E+ H P LLVG ++DLR+DP
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPK 127
Query: 568 TMEKLAKIKQKPVSLEQGEKLAKEL 642
T+E+L+K QKP++ E+G+ +A+++
Sbjct: 128 TIEELSKTSQKPITFEEGQVVAQKI 152
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 175 bits (427), Expect = 3e-45
Identities = 78/145 (53%), Positives = 103/145 (71%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 387
K V+VGDGA GKTCLLI ++ FP YVPTVF+NY V + G L L+DTAGQEDY
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 388 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPA 567
DRLRPLSYP + V L+CF+V SP S +NV+EKW+ E+ H P LLV + DLR+DP
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPILLVACKADLRNDPK 127
Query: 568 TMEKLAKIKQKPVSLEQGEKLAKEL 642
+E+L+K Q PV+ E+G+ +A+++
Sbjct: 128 IIEELSKTNQHPVTTEEGQAVAQKI 152
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 154 bits (374), Expect = 9e-39
Identities = 76/151 (50%), Positives = 98/151 (64%), Gaps = 3/151 (1%)
Frame = +1
Query: 190 SKMQTIK-CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIG--GEPYTLGL 360
SK +T K VVVGDG GKTCLLI +++ FP YVPTVF+NY + G + L L
Sbjct: 9 SKSETSKKLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELAL 68
Query: 361 FDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGT 540
+DTAGQE+YDRLRPLSYP ++V L+CFS+ P+S NV EKW PE+ H +TP +LVG
Sbjct: 69 WDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRTPIVLVGL 128
Query: 541 QIDLRDDPATMEKLAKIKQKPVSLEQGEKLA 633
+ DLR D E L PV+ +Q + +A
Sbjct: 129 KADLRKDRNATEVLRTQGLTPVTYQQAQSVA 159
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 148 bits (359), Expect = 6e-37
Identities = 70/145 (48%), Positives = 94/145 (64%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 387
K VVVGDGA GKT LL +T FP+EYVPTVF+NY + G+ L L+DTAGQE+Y
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 388 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPA 567
+RLRP+SY + + LV F++ SP S ENV KW+ EI PF+LVG + DLR DP
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPFILVGMKADLRSDPV 129
Query: 568 TMEKLAKIKQKPVSLEQGEKLAKEL 642
+E++ + Q V +Q E +A+ +
Sbjct: 130 AIEEMRRRNQNFVKSQQAELVAQRI 154
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 120 bits (289), Expect = 2e-28
Identities = 61/145 (42%), Positives = 85/145 (58%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 387
K V++GDGA GKT LL +T FP Y PT+F+NY + + G L L+DTAGQE+Y
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 388 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPA 567
D+LR LSY T V ++CF+V S S ENV KW+PE++ + +LV + DLR
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKLVLVALKCDLRGADE 134
Query: 568 TMEKLAKIKQKPVSLEQGEKLAKEL 642
+KI + E+G AK++
Sbjct: 135 EQVDHSKI----IDYEEGLAAAKKI 155
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 77.4 bits (182), Expect = 2e-15
Identities = 50/150 (33%), Positives = 76/150 (50%), Gaps = 1/150 (0%)
Frame = +1
Query: 196 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG 375
++ K VVVGDG VGK+ L I + F EY PT+ D+Y I GE L + DTAG
Sbjct: 6 LREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAG 65
Query: 376 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKT-PFLLVGTQIDL 552
QE+Y +R + FL+ +++ S SSF+ + + + + T P +LV + DL
Sbjct: 66 QEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDL 125
Query: 553 RDDPATMEKLAKIKQKPVSLEQGEKLAKEL 642
++ VS +GE+LAK +
Sbjct: 126 E------------AERVVSRAEGEQLAKSM 143
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 75.8 bits (178), Expect = 5e-15
Identities = 43/120 (35%), Positives = 65/120 (54%), Gaps = 5/120 (4%)
Frame = +1
Query: 205 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQE 381
+K V++GD VGKTCL+ + KF EY T+ D V++ + TL L+DTAGQE
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 382 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKT----PFLLVGTQID 549
+ L Y D ++ ++V + SF++V E W E + + PF++VG QID
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQDECAFPFIIVGNQID 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 75.8 bits (178), Expect = 5e-15
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Frame = +1
Query: 205 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQE 381
IK +++GD VGK+CLL+ ++ + F ++ T+ ++ + T+ + G+ L ++DTAGQE
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 382 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPF-LLVGTQIDLRD 558
+ + Y L+ + V SF+NV+ W + H + + +L+G + D D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVR-TWFSNVEQHASENVYKILIGNKCDCED 128
Query: 559 DPATMEKLAKIKQKPVSLEQGEKLAKEL 642
Q+ VS EQG+ LA EL
Sbjct: 129 ------------QRQVSFEQGQALADEL 144
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 70.5 bits (165), Expect = 2e-13
Identities = 50/159 (31%), Positives = 82/159 (51%), Gaps = 2/159 (1%)
Frame = +1
Query: 175 ENYY*SKMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYT 351
ENY S ++ K V +G+ +VGKT L+ + ++F + Y T+ D + T+ +
Sbjct: 3 ENYSFS-LRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVR 61
Query: 352 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHQQKTPFL 528
L L+DTAGQE + L P + V ++ + + + +SF N EKW+ ++ +
Sbjct: 62 LQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNT-EKWIEDVRAERGDDVIIV 120
Query: 529 LVGTQIDLRDDPATMEKLAKIKQKPVSLEQGEKLAKELK 645
LVG + DL D ++ V+ E+GEK AKELK
Sbjct: 121 LVGNKTDLAD------------KRQVTQEEGEKKAKELK 147
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 69.3 bits (162), Expect = 4e-13
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 384
K +++GD VGK+CLL+ + + + Y+ T+ ++ + T + G+ L ++DTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 385 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQ-QKTPFLLVGTQIDLRDD 561
+ + Y ++ + V SF NVK+ W+ EI + + LLVG + D+ D
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQ-WLQEIDRYAVEGVNRLLVGNKSDMVDK 128
Query: 562 PATMEKLAK 588
+AK
Sbjct: 129 KVVEYSVAK 137
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 67.3 bits (157), Expect = 2e-12
Identities = 36/134 (26%), Positives = 72/134 (53%), Gaps = 5/134 (3%)
Frame = +1
Query: 193 KMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDT 369
K +K +++G+ VGKT ++ Y KF +Y T+ ++ V++ + TL L+DT
Sbjct: 5 KKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDT 64
Query: 370 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHQQKT-PFLLVG 537
AGQE + L Y D ++ + V + SFE + +++++ + + +T PF+L+G
Sbjct: 65 AGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLG 124
Query: 538 TQIDLRDDPATMEK 579
++D+ + + K
Sbjct: 125 NKVDVEEQKRMVSK 138
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 66.1 bits (154), Expect = 4e-12
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 387
+ V+G +VGK+ L + Y N F Y PT+ + ++ + G+ + + DTAGQ++Y
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 388 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITH-HQQKTPFLLVGTQIDLRDDP 564
L +++ +S+ S SSFE VK + H + P ++VG + DL
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLH--- 124
Query: 565 ATMEKLAKIKQKPVSLEQGEKLAKELK 645
Q+ V+ E+G+ LA E K
Sbjct: 125 ---------MQRAVTAEEGKALANEWK 142
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 64.5 bits (150), Expect = 1e-11
Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQED 384
K V++GD VGK+ LL+ +T N+F E T+ +A +++ + ++DTAGQE
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 385 YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-QQKTPFLLVGTQIDL 552
Y + Y L+ + + SSF+NV +W+ E+ H +LVG + DL
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSNIVIMLVGNKTDL 127
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 59.7 bits (138), Expect = 4e-10
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Frame = +1
Query: 202 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 378
T K V+VGDG GKT + + T +F +Y+ T+ + + + ++DTAGQ
Sbjct: 9 TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQ 68
Query: 379 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDLRD 558
E LR Y Q ++ F V S +++NV W ++ + P +L G ++D+++
Sbjct: 69 EKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPH-WWRDLVRVCENIPIVLCGNKVDVKE 127
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 58.4 bits (135), Expect = 8e-10
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Frame = +1
Query: 208 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYT--LGLFDTAGQE 381
K V++GD AVGK+ L++ + ++F T+ + + E + L ++DTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 382 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-QQKTPFLLVGTQIDLRD 558
Y L P+ Y + +V + + +S E K W+ E+ + L G ++DL
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAK-SWIKELQRQAPEGIVIALAGNKLDLAQ 134
Query: 559 DPATMEK 579
+ +EK
Sbjct: 135 ERRAVEK 141
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 57.6 bits (133), Expect = 1e-09
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Frame = +1
Query: 202 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQ 378
TIK ++GD ++GKT L+++Y F E T+ N+ T+ I T ++D GQ
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQ 69
Query: 379 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQID 549
++ + P+ L F + S+ ++KE W + + +L+GT+ D
Sbjct: 70 REFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-WYRQARGFNKTAVPILIGTKYD 125
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 45.2 bits (102), Expect = 8e-06
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 6/124 (4%)
Frame = +1
Query: 205 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV---FDNYAVTVMIGGEP--YTLGLFDT 369
+K V+ G GK+CLL + N++ + TV F + ++V +G + L ++DT
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69
Query: 370 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKT-PFLLVGTQI 546
AGQE + + Y ++ + V + SFE + W+ +I T +L G++
Sbjct: 70 AGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPSTICVVLAGSKS 128
Query: 547 DLRD 558
DL++
Sbjct: 129 DLQN 132
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 33.1 bits (72), Expect = 0.035
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Frame = +1
Query: 211 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD 390
C VVG + GKT LL S+ N + P N +V L L + G+ D D
Sbjct: 424 CFVVGSKSCGKTALLSSFINNN-TNRLTPNTVVN---SVEFQSTQRYLVLSE-IGETDLD 478
Query: 391 RL-RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLVGTQIDL 552
L P S D+ + + +P+SF + + + QK P + T+ DL
Sbjct: 479 ILAEPKSLEACDILCLLYDSSNPNSFSFIAN--LLNLYPDLQKIPCVFAATKADL 531
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.1 bits (62), Expect = 0.57
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +1
Query: 211 CVVVGDGAVGKTCLL 255
C++VGD A GKTC+L
Sbjct: 1872 CILVGDTATGKTCIL 1886
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.9 bits (59), Expect = 1.3
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = +1
Query: 205 IKCVVVGDGAVGKTCLLISY----TTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTA 372
I +VVG+ ++GKT + S+ TN P + + F + T+ G + + L + DT
Sbjct: 119 INLIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMD--FVEHKATLSDGDQKFNLTIVDTP 176
Query: 373 GQED 384
G D
Sbjct: 177 GFGD 180
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 41 FNFYSQVLYCFIFTIYFRGLFPAEVAMVSKL 133
+NF+S V YCF+ + F V M S L
Sbjct: 72 WNFFSVVTYCFVLFLQFAEQSTLRVPMASLL 102
>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 922
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = -1
Query: 384 IFLTCSIK*TQCIWFTSYHNCHSIIIKHCWHIL*WKFVGCIANK*ACFTNRTISY 220
+ +TCS IW + +CH I H I+ F N C +R + Y
Sbjct: 590 LLVTCSADKNVKIWGLDFGDCHKSIFAHQDSIMEVTFQPDTYNFFTCSKDREVRY 644
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 477 LHIFKRTRTYYTEADKKYISLW 412
L+IFK+ YY +ADK + LW
Sbjct: 827 LNIFKKQTPYYNQADK--VHLW 846
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 424 VFLVCFSVVSPSSFENVKEKWVPEITHHQQKTPFLLV 534
V L CF + P SF W+ I+H LLV
Sbjct: 1740 VILECFLAIQPRSFPAFTFAWLSLISHSYLLPKVLLV 1776
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +1
Query: 442 SVVSPSS--FENVKEKWVPEITHHQQKTPFLLVGTQIDLRDDPATMEKLAKIKQKPVSLE 615
S SP S F N+ +W + T + + L D P T++ + I Q P+ L+
Sbjct: 74 SPTSPDSCTFGNMTFQWTSLLQDVFSGTSAFAIFKRFPLTDTPLTLQNMLYINQLPI-LK 132
Query: 616 QGEK 627
G K
Sbjct: 133 GGHK 136
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,721
Number of Sequences: 5004
Number of extensions: 57804
Number of successful extensions: 168
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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