Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F05
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   5.1  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    24   6.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    24   6.8  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    24   6.8  

>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 311 FIPYTKKLYRVQCVLN**FCQQSLALMSISSG-KNYNIFI*NEISERMINFEIH 153
           F+  T    RVQCV+   +  QSL  + +SS   N N  + N   + ++    H
Sbjct: 261 FVDGTWDTSRVQCVIEALYALQSLVPIGLSSSIANQNAVVSNHGIDVLLTLATH 314


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
 Frame = +2

Query: 50  SGSIYQSRRRGSYR---WCFYWFNCCTNFIALCTSATY 154
           +G++     RG  +   WC      C NFI LC    Y
Sbjct: 12  TGTVILKTTRGDIQIELWCKEVPKACRNFIQLCLEGYY 49


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
 Frame = +2

Query: 50  SGSIYQSRRRGSYRWCFYW--FNCCTNFI 130
           +G   +   RG  +W  YW  F  C+ F+
Sbjct: 874 TGQAAEKMERGKVKWKVYWTYFKACSLFL 902


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 81  GATAGAFTGLIAVPISSHYVPP 146
           G   GA  GL+A+   S +VPP
Sbjct: 286 GFCEGAVAGLVAITPGSGFVPP 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,036
Number of Sequences: 5004
Number of extensions: 21926
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)