Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F05
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0771 + 6453130-6454488 50 5e-07
11_02_0011 - 7337618-7338496,7338596-7338991 48 2e-06
01_06_0824 - 32243495-32244319,32244449-32244859 48 2e-06
11_01_0767 + 6438648-6438809,6439146-6440000 44 4e-05
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 42 2e-04
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 42 2e-04
11_02_0012 - 7346282-7347136,7347234-7347593 41 3e-04
04_04_0620 + 26656072-26656417,26656585-26657396 40 6e-04
01_01_1152 + 9170628-9171899 39 0.001
05_06_0044 - 25150322-25151260 36 0.010
04_04_0619 + 26652923-26653267,26653440-26654273 36 0.014
01_06_0038 - 25819433-25820344 27 3.6
04_04_1498 + 34002677-34003104,34004427-34004532,34004643-340048... 27 4.8
02_01_0753 - 5586705-5586766,5587864-5588056,5588154-5588423,558... 27 6.3
06_01_0957 - 7378608-7378662,7378828-7379012 26 8.4
>11_01_0771 + 6453130-6454488
Length = 452
Score = 50.4 bits (115), Expect = 5e-07
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 36 VSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLIL--YKDII 209
V + +A I+V+EEG A A T +P VPPPP+DF +HPFAY I+ +
Sbjct: 384 VGDIQHKAVIEVNEEGTVAAAATMTRMLPSG---VPPPPVDFVAEHPFAYFIVEEMSSAV 440
Query: 210 IFAG 221
+FAG
Sbjct: 441 VFAG 444
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 48.0 bits (109), Expect = 2e-06
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Frame = +3
Query: 18 KSGSVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLILY 197
+ G +VV E F A ++V+EEG A A T +S Y P DF DHPFA+ ++
Sbjct: 349 RGGGLVVEEVFHRAVVEVNEEGTEAAASTACTIRLLSMSY----PEDFVADHPFAFFVVE 404
Query: 198 K--DIIIFAG 221
+ ++FAG
Sbjct: 405 ETSGAVLFAG 414
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 48.0 bits (109), Expect = 2e-06
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Frame = +3
Query: 30 VVVSEAFQEAFIKVDEEGATAGAFTGLI-AVPISSHYVPPPPMDFKVDHPFAYLIL--YK 200
+VVS + E+F++V+EEG A A T ++ + ++ P +DF DHPF +LI
Sbjct: 336 IVVSAVYHESFVEVNEEGTEAAAATAVVMTLGCAAPSAPVHVVDFVADHPFMFLIKEDLT 395
Query: 201 DIIIFAG 221
+++FAG
Sbjct: 396 GVVVFAG 402
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 44.0 bits (99), Expect = 4e-05
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Frame = +3
Query: 18 KSGSVVVSEAFQEAFIKVDEEGATAGAFT-----GLIAVPISSHYVPPPPM-DFKVDHPF 179
+ ++ VS + ++V+EEG+ A A+T L Y PPP + DF DHPF
Sbjct: 254 EDAAMFVSSVIHKVVVEVNEEGSEAAAYTEESDDDLGCSLYDDDYTPPPKLVDFVADHPF 313
Query: 180 AYLILYK--DIIIFAG 221
A+ I+ + I+FAG
Sbjct: 314 AFFIVEERSQAIVFAG 329
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +3
Query: 27 SVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLIL--YK 200
++ VS F ++F++VDEEG A A + + S P +DF DHPF +LI
Sbjct: 189 NLFVSSLFHKSFVQVDEEGTEAAAASAAVV----SFRSAPVTVDFVADHPFLFLIREDMT 244
Query: 201 DIIIFAG 221
+++F G
Sbjct: 245 GVVLFIG 251
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Frame = +3
Query: 27 SVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLIL--YK 200
++ VS F ++FI+V+EEG A A AV +S + P ++F DHPF +LI
Sbjct: 649 NLFVSSVFHKSFIEVNEEGTEATA-----AVMVSMEHSRPRRLNFVADHPFMFLIREDVT 703
Query: 201 DIIIFAG 221
+I+F G
Sbjct: 704 GVILFIG 710
Score = 41.1 bits (92), Expect = 3e-04
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Frame = +3
Query: 6 TEIVKSG---SVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHP 176
TE+V S ++ VS F ++F++V+EEG A A T + S+ P DF DHP
Sbjct: 387 TEMVDSPEGKNLFVSSVFHKSFVEVNEEGTEAAAATAAVITLRSA----PIAEDFVADHP 442
Query: 177 FAYLIL--YKDIIIFAG 221
F +LI +++F G
Sbjct: 443 FLFLIQEDMTGVVLFVG 459
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 41.1 bits (92), Expect = 3e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +3
Query: 30 VVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLILYK--D 203
VVV + A ++V+EEG A A T + P +DF DHPFA+ ++ + D
Sbjct: 332 VVVEKVMHRAVVEVNEEGTEAAAATACTMKFLCLTLTSP--VDFVADHPFAFFVVEEKSD 389
Query: 204 IIIFAG 221
++FAG
Sbjct: 390 AVLFAG 395
>04_04_0620 + 26656072-26656417,26656585-26657396
Length = 385
Score = 39.9 bits (89), Expect = 6e-04
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = +3
Query: 36 VSEAFQEAFIKVDEEGATA-GAFTGLIAVPISSHYVPP--PPMDFKVDHPFAYLIL-YKD 203
VS Q+ ++VDEEG TA A + S Y PP PPM F +HPF + I+ YK
Sbjct: 309 VSTMRQKCAVEVDEEGTTAVEAMYSPSSPGYSPGYQPPRPPPMSFVAEHPFMFAIVEYKK 368
Query: 204 I-IIFAG 221
++F G
Sbjct: 369 AQVLFLG 375
>01_01_1152 + 9170628-9171899
Length = 423
Score = 38.7 bits (86), Expect = 0.001
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 36 VSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLIL 194
++E + +A I+VDE G A A T ++ + S PP+DF D PF + ++
Sbjct: 355 IAEVYHQATIEVDELGTVAAASTAVVMMQKGSSL---PPVDFVADRPFLFAVV 404
>05_06_0044 - 25150322-25151260
Length = 312
Score = 35.9 bits (79), Expect = 0.010
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 36 VSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPPMDFKVDHPFAYLIL--YKDII 209
VS + F+ V+EEG A A G + + +DF DHPF + I+ ++
Sbjct: 243 VSSLLHQCFVNVNEEGTVAAA--GTVGEIMGFAMPDDQIVDFVADHPFLFFIVEEVSGLV 300
Query: 210 IFAG 221
+FAG
Sbjct: 301 VFAG 304
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 35.5 bits (78), Expect = 0.014
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +3
Query: 36 VSEAFQEAFIKVDEEGATAGAFTGLIAVPISS--HYVPPPPMDFKVDHPFAYLIL--YKD 203
VS Q+ ++VDEEG TA T P S P PM F +HPF + I+ K
Sbjct: 318 VSAMRQKCAVEVDEEGTTAVEATYSCCSPTYSGPESPKPRPMSFVAEHPFMFAIVEYEKA 377
Query: 204 IIIFAG 221
++F G
Sbjct: 378 QVLFLG 383
>01_06_0038 - 25819433-25820344
Length = 303
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 18 KSGSVVVSEAFQEAFIKVDEEGATAGAFTGLIAVPISSHYVPPPP 152
KS S S A ++ FIK +++ AF+ S +V PPP
Sbjct: 24 KSSSHGASNAGEDDFIKAEDDEEATMAFSSTCPSFHSEDFVSPPP 68
>04_04_1498 +
34002677-34003104,34004427-34004532,34004643-34004811,
34004901-34005088,34005644-34005763
Length = 336
Score = 27.1 bits (57), Expect = 4.8
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 81 GATAGAFTGLIAVPISSHYVPPPPMDFKV 167
G AGA + VP + Y PPPP+ F+V
Sbjct: 75 GGAAGAVSPQPPVPAMAFY-PPPPLAFRV 102
>02_01_0753 -
5586705-5586766,5587864-5588056,5588154-5588423,
5588522-5588687,5589049-5589209,5590065-5590181,
5590269-5590549,5590750-5590833,5591100-5592542,
5593167-5593575
Length = 1061
Score = 26.6 bits (56), Expect = 6.3
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 36 VSEAFQEAFIKV-DEEGATAGAFTGLIAVPISS 131
V +A +E + V +EEG G F G + VP+S+
Sbjct: 76 VGDAEEELVVSVLNEEGYFGGGFLGRVKVPLST 108
>06_01_0957 - 7378608-7378662,7378828-7379012
Length = 79
Score = 26.2 bits (55), Expect = 8.4
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +3
Query: 57 AFIKVDEEGATAGAFTGLIAVP--ISSHYVPPPP 152
A I+V A + A + IAVP SH VPPPP
Sbjct: 23 AAIRVRAPAALSRAASEKIAVPRIAPSHAVPPPP 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,731,989
Number of Sequences: 37544
Number of extensions: 131224
Number of successful extensions: 417
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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