Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F04
         (291 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein L38|Schizosacc...    96   8e-22
SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein L38|S...    90   5e-20
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    31   0.026
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual     27   0.42 
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ...    25   3.0  
SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr 3||...    24   3.9  
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch...    24   5.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    24   5.2  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    24   5.2  
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac...    24   5.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    23   6.9  
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    23   6.9  
SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyce...    23   6.9  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    23   9.1  
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual       23   9.1  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    23   9.1  

>SPBC577.02 |rpl3801|rpl38-1|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 74

 Score = 96.3 bits (229), Expect = 8e-22
 Identities = 47/70 (67%), Positives = 57/70 (81%), Gaps = 1/70 (1%)
 Frame = -2

Query: 272 MPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVRCSRFLYTLVITDKEKAEKLKQS 96
           MPR+I DIK FL  ARRKDA S +IKKN  ++VKFK+RCS++LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60

Query: 95  LPPGLQVKEV 66
           LPP L V EV
Sbjct: 61  LPPDLTVTEV 70


>SPAC30D11.12 |rpl3802|rpl38-2, rps38|60S ribosomal protein
           L38|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 74

 Score = 90.2 bits (214), Expect = 5e-20
 Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
 Frame = -2

Query: 272 MPREIKDIKDFLLKARRKDAKSVKIKKNPEN-VKFKVRCSRFLYTLVITDKEKAEKLKQS 96
           MPR++ DIK FL  A R DA S ++KKN    VKFK+RCSR+LYTLV+ D +KAEKL+QS
Sbjct: 1   MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60

Query: 95  LPPGLQVKEV 66
           LPP L V EV
Sbjct: 61  LPPALTVTEV 70


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 31.5 bits (68), Expect = 0.026
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = -2

Query: 212 KSVKIKKN-PENVKFKVRCSRFLYTLVITDKEKAEK--LKQSLPPGLQVKEVK 63
           KS+ + +N P+  K K +      T+VITD+E  ++  +KQ +P  +Q  EVK
Sbjct: 200 KSINVVRNRPDIEKLKEQLKSLGATIVITDEELMDRKTMKQKVPEWIQGGEVK 252


>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 0.42
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 156 SVPVHPRHHGQGEGRETETEFTSRSPG*GSE 64
           +V  H + HG+G GR  E  F +R+PG  SE
Sbjct: 181 AVESHSKFHGKGNGR-VEIWFGARTPGGVSE 210


>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 272 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSR 153
           + RE  +     LKA RK+A+ V+ +  P   K+++  SR
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSR 472


>SPCC622.09 |htb1||histone H2B |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = +1

Query: 106 SFSAFSLSVMTRVY-----RNREQRTLNXXXXXXXXXXTDLASFLRAFNKKSLIS 255
           ++S++   V+ +V+      N+  R LN             AS L A+NKKS IS
Sbjct: 36  TYSSYIYKVLKQVHPDTGISNQAMRILNSFVNDIFERIATEASKLAAYNKKSTIS 90


>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 180 CKVQGPLLSVPVHPRHHGQGEG 115
           CKV G  ++  + P HH  G G
Sbjct: 76  CKVYGGSVNRGMRPSHHRDGSG 97


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 257 KDIKDFLLKARRKDAKSVKIKKNPEN 180
           K I+D+L K    ++ +V + K+PEN
Sbjct: 684 KPIRDYLEKILLGESSAVFLSKSPEN 709


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 290 DITHFIMPREIKDIKDFLLKARRKDAKS 207
           D+  +   R++KD  D + K  RKD KS
Sbjct: 419 DLKKYEKSRKLKDYIDDIRKGYRKDLKS 446


>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
           S19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 144

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 180 CKVQGPLLSVPVHPRHHGQGEG 115
           CKV G  ++  + P HH  G G
Sbjct: 76  CKVYGGSVNRGMRPSHHRDGSG 97


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 42   LINPSHSLHFLNLE 83
            LINPSHS+ F N +
Sbjct: 1187 LINPSHSVIFFNTD 1200


>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 266 REIKDIKDFLLKARRKD 216
           R IKD+KD   KA  KD
Sbjct: 300 RSIKDLKDLYEKANSKD 316


>SPAC823.04 |||rRNA processing protein, DUF947|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 189

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 236 LKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 63
           +K +  + K +K+K  P+ +  K   SRF   +    K   +    SL   L   +VK
Sbjct: 1   MKTQTTNQKQLKVKHAPQELSSKKPVSRFREVISEPKKFTRDPRFDSLSGNLSKDKVK 58


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
            Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = -2

Query: 242  FLLKARRKDAKSVKIK-----KNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQ 78
            F+ K R+   KSVKIK     K P+ +K        +  +  TDK    K K      + 
Sbjct: 891  FIEKGRKNQVKSVKIKGMTIIKAPDALK-NANLHNEVIVMQTTDKPIVLKAKSKKIHNIW 949

Query: 77   VKEVK 63
            V+ +K
Sbjct: 950  VQAIK 954


>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 173 FKVRCSRFLYTLVITDKEKAEKLK 102
           FK+    F  +LV+TD +K  K+K
Sbjct: 425 FKISKQNFDESLVLTDPKKKTKIK 448


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 177 KVQGPLLSVPVHPRHHG--QGEGRETETEFTSRSPG*GSEVND 55
           ++ GPL +V +HPR  G     G+E +    S +P   S +++
Sbjct: 125 QLHGPLSAVELHPRIPGIIAAGGKENDVCLYSCNPTCKSNIDE 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,669
Number of Sequences: 5004
Number of extensions: 13306
Number of successful extensions: 44
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)