Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F04
         (291 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical pr...   124   1e-29
AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical ...    31   0.18 
U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone...    28   1.3  
AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear recep...    28   1.3  
AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear recep...    28   1.3  
AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical...    27   3.0  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    26   5.2  
U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusi...    26   5.2  
U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusi...    26   5.2  
AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical ...    25   6.8  
Z81146-7|CAB03523.2|  517|Caenorhabditis elegans Hypothetical pr...    25   9.1  
Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical pr...    25   9.1  

>Z81463-5|CAB03853.1|   70|Caenorhabditis elegans Hypothetical
           protein C06B8.8 protein.
          Length = 70

 Score =  124 bits (298), Expect = 1e-29
 Identities = 56/70 (80%), Positives = 65/70 (92%)
 Frame = -2

Query: 272 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSL 93
           MP+EIK+IKDFL+KARRKDAKSVKIKKN  N KFKVRC+ +LYTLV+ DK+KAEKLKQSL
Sbjct: 1   MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60

Query: 92  PPGLQVKEVK 63
           PPG+QVKE+K
Sbjct: 61  PPGIQVKELK 70


>AC006827-4|AAF60881.1|  579|Caenorhabditis elegans Hypothetical
           protein Y81B9A.1 protein.
          Length = 579

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = -2

Query: 290 DITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNP-ENVKFKVR--CSRFLYTLVIT 129
           +I+HF M + I+D+K +  + R ++    K++ N  EN++  +R   SRF+Y   +T
Sbjct: 419 NISHFQMAQYIEDLKSYGKRLRGEEWTLCKLEYNSIENIRSPLRPEGSRFIYLPTVT 475


>U53153-8|AAC69040.1|  428|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 44 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 287 ITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 171
           IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 150 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AY305833-1|AAR11978.1|  428|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 428

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 287 ITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 171
           IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 150 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 187


>AF273785-1|AAG15134.1|  423|Caenorhabditis elegans nuclear receptor
           NHR-44 protein.
          Length = 423

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -2

Query: 287 ITHFIMPREIKDIKDFLLKARRKDAKSVKIKKNPENVKF 171
           IT F +   IKD  D++LK   K  KSVK+K + E + F
Sbjct: 145 ITFFDLTPIIKDA-DYILKRIPKLEKSVKVKSSLEQLAF 182


>AL033514-26|CAA22110.1| 1144|Caenorhabditis elegans Hypothetical
           protein Y75B8A.26 protein.
          Length = 1144

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -2

Query: 242 FLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVI 132
           F  K+R+ + K  K++KN ENV+   R  + +Y L I
Sbjct: 524 FSEKSRKSEEKPQKVEKNVENVQLG-RVKKSVYQLYI 559


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 261 NQGYQRFFVESA*ERCQIGKDKEEP*ECKVQGPLLSVPVH 142
           N+G    +V+   +R QI KD+ +P  CKV  PL     H
Sbjct: 570 NEGDDCGYVQLVPDRMQI-KDEVQPFSCKVPRPLKGYICH 608


>U23529-12|AAL13323.1|  561|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform b protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 146 YTLVITDKEKAEKLKQSLPPGLQVKEVK 63
           +T V+  K   EKL +  P GL +++VK
Sbjct: 435 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 462


>U23529-11|AAK39165.1|  519|Caenorhabditis elegans Cation diffusion
           facilitator familyprotein 1, isoform a protein.
          Length = 519

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 146 YTLVITDKEKAEKLKQSLPPGLQVKEVK 63
           +T V+  K   EKL +  P GL +++VK
Sbjct: 393 FTAVVLVKTSGEKLLKQTPEGLDLEKVK 420


>AF125443-1|AAD12801.1|  783|Caenorhabditis elegans Hypothetical
           protein H32C10.3 protein.
          Length = 783

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 102 FQFLCLLLVRDDEGVQEPRAADXXXXXXXXXXXXXRFGIFPTRFQQKIFDILDFT 266
           F  +  LLV+ D  +++ R  D              FG+FP R   K+   LDFT
Sbjct: 258 FIIIAYLLVKFDN-IKDTR--DNLGRSALMMAADKSFGLFPIRIFTKVDAYLDFT 309


>Z81146-7|CAB03523.2|  517|Caenorhabditis elegans Hypothetical
           protein K10D11.4 protein.
          Length = 517

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 60  SLHFLNLETWR*TLFQFLCLLLVRDDEG 143
           S HF+ +ET   TL++FL  +L  D  G
Sbjct: 409 SFHFIGVETKNSTLYKFLYRVLEADLAG 436


>Z54236-5|CAA90980.1|  386|Caenorhabditis elegans Hypothetical
           protein C27B7.5 protein.
          Length = 386

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 146 YTLVITDKEKAEKLKQSLPP 87
           Y + IT K  AEKL + +PP
Sbjct: 299 YVMTITGKGPAEKLMKEVPP 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,972,708
Number of Sequences: 27780
Number of extensions: 77058
Number of successful extensions: 280
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)