Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F03
         (281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   0.38 
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   0.67 
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    24   3.6  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    24   3.6  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    23   6.3  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    23   8.3  

>SPCC4B3.11c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 116

 Score = 27.5 bits (58), Expect = 0.38
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +2

Query: 59  VKEAFFSSQSQQIIKGVIARDIDHTEASAIITAGGVGFSY-VNLRLKSERGSSINYQIEI 235
           + + F+S+  ++ IK ++   +  +    I  +GG G  Y V ++ K+ +G +   Q  +
Sbjct: 23  ITKRFYSTPGERRIKDILTEKLSPSSLRVIDVSGGCGSMYQVAIKSKAFQGKNTLAQHRL 82

Query: 236 YV*ILKSLIQ 265
              ILK  I+
Sbjct: 83  VNSILKEEIR 92


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 0.67
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 93  KSLRVLLQEILIILKRRPSSQREVSAS 173
           K   + LQ +++ILKR P+  RE+ +S
Sbjct: 82  KEAHLSLQALMLILKRSPTVLREIKSS 108


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +3

Query: 69  PSSHLNLNKSLRVLLQEILIILKRRPSSQREVSASHM 179
           PS+HL+  K+  + L +++   ++ P S R+    H+
Sbjct: 240 PSNHLSSQKNAVLKLAQLISSFEKLPESVRQYLLFHL 276


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 8   LVWQEKAEYVGIPFKKRVKEAFFSSQSQQIIKG 106
           L+       V IP +K+  EAF  S    ++KG
Sbjct: 190 LITDANNSLVSIPSRKKRDEAFIESVMSSLLKG 222


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 47  FKKRVKEAFFSSQSQQIIKGVIARDIDHTEASAIITAGGVG 169
           FK   + AFFS   ++   G++   ID      I    GVG
Sbjct: 226 FKASAENAFFSVWKRRSGIGLLGNSIDVLSGRWIYPVSGVG 266


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 69  ASFTLFLNGIPTYSAFSCHTNC 4
           A+FT+  + I TY  FS  T C
Sbjct: 262 ATFTIIDSFIHTYDGFSSMTQC 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 930,894
Number of Sequences: 5004
Number of extensions: 13621
Number of successful extensions: 32
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 63619130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)