Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_F03
(281 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0126 - 41222916-41222942,41223120-41223190,41223478-412235... 29 0.55
03_04_0183 + 18202102-18202178,18202786-18202861,18203361-182034... 29 0.73
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 27 3.0
04_04_0210 + 23616407-23618851 27 3.0
09_04_0527 - 18337968-18338077,18338440-18341212 26 5.2
04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786 25 6.8
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 25 6.8
07_03_0950 + 22828787-22828982,22829091-22829164,22829512-228295... 25 9.0
01_06_0906 + 32886693-32886919,32887589-32887708,32887978-328881... 25 9.0
>01_07_0126 -
41222916-41222942,41223120-41223190,41223478-41223560,
41223587-41223653,41223740-41223848,41224431-41224511,
41224671-41224940,41225035-41226510,41226832-41226908,
41227812-41227912,41229397-41229660,41230964-41231136
Length = 932
Score = 29.1 bits (62), Expect = 0.55
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 89 QQIIKGVIARDIDHTEASAIITAGGVGFSYVNLRLKSE 202
+ I G+ RDIDH E S +IT G S + L L ++
Sbjct: 478 RNISSGITQRDIDH-EVSEVITRSGTNDSNIPLSLDTD 514
>03_04_0183 +
18202102-18202178,18202786-18202861,18203361-18203413,
18203535-18204025,18204303-18204463,18205845-18206045,
18206160-18206747
Length = 548
Score = 28.7 bits (61), Expect = 0.73
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 12 YGKRKPNML---VFRLRKE*RKPSSHLNLNKSLRVLLQEILIILKRRPSSQREVSASHMS 182
Y K P +L V+RL K ++ + H LN+ V ++E L +L R++ S MS
Sbjct: 234 YKKHHPPILDDEVWRLEKIGKEGAFHKRLNREKIVTVKEFLTLLHLDAPRLRKILGSGMS 293
Query: 183 T 185
T
Sbjct: 294 T 294
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/39 (23%), Positives = 22/39 (56%)
Frame = +2
Query: 119 DIDHTEASAIITAGGVGFSYVNLRLKSERGSSINYQIEI 235
++DH E I+ GG+ + V+ +K ++G ++ ++
Sbjct: 45 ELDHDEVQDIVLPGGLTVAGVSKSIKCDKGERTRFRSDV 83
>04_04_0210 + 23616407-23618851
Length = 814
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/65 (23%), Positives = 33/65 (50%)
Frame = +2
Query: 32 YVGIPFKKRVKEAFFSSQSQQIIKGVIARDIDHTEASAIITAGGVGFSYVNLRLKSERGS 211
++G+ +RV A+ + + + R T A++ + GG YV +RL + RG+
Sbjct: 29 WMGVGSGERVASAYDLVEQMHYLYVRVVRARGLTAAASTVAGGGGCNPYVEVRLGNYRGT 88
Query: 212 SINYQ 226
+ +++
Sbjct: 89 TRHHE 93
>09_04_0527 - 18337968-18338077,18338440-18341212
Length = 960
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 35 VGIPFKKRVKEAFFSSQSQQIIKGVIARDIDH 130
VGI F VKEA+F+ ++ + I H
Sbjct: 884 VGIEFLSSVKEAYFTRMHSDFVRNLRTGKISH 915
>04_03_0978 - 21385894-21386097,21386330-21386791,21387580-21387786
Length = 290
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 29 EYVGIPFKKRVKEAFFSSQSQQIIKGVIARDI 124
E VG PF + EA +S Q G+++ ++
Sbjct: 214 ETVGKPFDPSIHEAIAREESHQFKAGIVSHEV 245
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 75 SHLNLNKSLRVLLQEILIILKRRPSSQREVSASHMS 182
S LN+N++ + +L++ PS RE S SH S
Sbjct: 59 SGLNVNQARLPQQGTYMALLRQVPSHHREASGSHTS 94
>07_03_0950 +
22828787-22828982,22829091-22829164,22829512-22829570,
22830148-22830487,22830623-22833376
Length = 1140
Score = 25.0 bits (52), Expect = 9.0
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 66 KPSSHLNLNKSLRVLLQEILIILKRRPSSQREVSASHMST 185
K SH++++ +L L+ +L K+ PSSQ + ST
Sbjct: 638 KSKSHVSVDGALASALEALLGSTKKTPSSQSAACPASNST 677
>01_06_0906 +
32886693-32886919,32887589-32887708,32887978-32888101,
32888224-32888361,32888492-32888701,32889085-32889232,
32890452-32890801,32890909-32890963,32891087-32891382,
32891480-32891531,32891740-32891947,32892064-32892446,
32894102-32894538,32895452-32895643
Length = 979
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 5 QLVWQEKAEYVGIPFKKRVKEAFFSSQSQQIIKGVIARDID 127
Q++ QEK +Y+ P++ + F S +++ VI D D
Sbjct: 157 QVLKQEKVDYIVAPYEADAQMTFLS--VNKLVDAVITEDSD 195
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,754,581
Number of Sequences: 37544
Number of extensions: 81414
Number of successful extensions: 162
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 279801164
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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