Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_F02
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    56   3e-09
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   7.3  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    25   9.6  
SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr ...    25   9.6  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
 Frame = +1

Query: 283 EQAAKHLRHYTPLLAAFAQSAKAELALLSKVQEYCYENMSFMRAFSKLVLMLYKTNVISE 462
           E  AK +  + PLLA    S + ++  +  +Q+YC   +S  R F +L+   Y+  +  E
Sbjct: 574 EALAKVMTRWGPLLAKLTFSHEEQVDNVLTLQKYCV-RLSMTRHFLQLLGYFYQLEIAEE 632

Query: 463 EVILKWYREPNSSKGKMMFLDQM--KKFVEWLQNA 561
             I +WY +P SS+G++  L     K+FV+WL  A
Sbjct: 633 NAIQEWYSDPRSSEGELAALRDAGGKQFVDWLNTA 667


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 492 RLAVPLEDHLLGDHVGLVQHQH*FAEGAHEAH 397
           R  + + DH  G  +G  QH H   +GAH  H
Sbjct: 167 RFGMEIGDHH-GPTLGAKQHSHSHEDGAHGVH 197


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 448 NVISEEVILKWYREPNSSKGKMMF 519
           N  S EV+  WYR P+   G  ++
Sbjct: 156 NTFSNEVVTLWYRAPDVLLGSRVY 179


>SPCC825.03c |psy1|sso1|SNARE Psy1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 61  LLRLHRAQASQEARRELTQALLDELAEEKPVRDLIQDLRDMA 186
           LLR +R+  ++ A RE+ +   D    E+ + +L Q  +DMA
Sbjct: 168 LLRSNRSGEARTALREVQERHADIKRIERTIAELAQLFQDMA 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,474
Number of Sequences: 5004
Number of extensions: 30122
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)