Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E22
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    26   4.0  
SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr 3...    26   5.2  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    25   6.9  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    25   6.9  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   9.1  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -1

Query: 268 SSVTLFHSQNFIGGLETMGIDWI*SSKDAKTFVSSTSPPKSASRHS 131
           S  T   S +F+    ++ +DWI  + D   +V S +PP     HS
Sbjct: 479 SHPTYTESVSFLWLDSSLWLDWIVENLDHTVYVDSITPPVFVIDHS 524


>SPCC70.08c |||methyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 243 WLWNKVTEESQLIDGQYKHFVDFVRRQSMPGAVPAPVREWLD 368
           W +    + +++++    H V++V   S P  +   VREWLD
Sbjct: 170 WFFGSEDDYTRMLEEAGFH-VEYVENISRPTLLNKDVREWLD 210


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 219 VSRPPIKFWLWNKVTEESQLIDGQYKH 299
           V R  IKF +++K  + S L+DG  K+
Sbjct: 30  VKRKSIKFDIYHKKNDTSSLLDGSNKN 56


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 201 IQSIPIVSRPPIKF 242
           I S+P+V RPPI+F
Sbjct: 227 IASLPVVKRPPIQF 240


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 180 KPLSAQHRRLSPLPATADW 124
           KPL   H R+S + +TA W
Sbjct: 156 KPLLISHHRISSITSTAKW 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,474,832
Number of Sequences: 5004
Number of extensions: 49114
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)