Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E22
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0528 - 29782382-29782864,29782994-29783092,29783319-297833...    30   1.8  
01_01_0074 - 561304-562131,562219-562425,563034-563084,563310-56...    30   1.8  
01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852           29   4.1  
12_01_0306 + 2311687-2312130                                           28   7.1  
05_01_0239 - 1785699-1785980,1786061-1786284,1786380-1786526,178...    28   7.1  
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881     28   7.1  

>02_05_0528 -
           29782382-29782864,29782994-29783092,29783319-29783387,
           29783781-29783888,29783965-29784274,29784772-29784812,
           29784886-29784942,29785290-29785448,29785587-29785655,
           29785728-29785877,29785967-29786098,29786347-29786433,
           29786516-29786686,29786760-29786960,29787348-29787416,
           29787510-29787618,29787887-29788005,29788676-29788780,
           29789377-29789755,29790022-29790150,29790223-29790402,
           29791310-29791469,29791604-29791744,29791832-29792021,
           29792100-29792161,29792879-29793107
          Length = 1335

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 444 QGEAVLYQVVVQEEGSDVCSLQLSPHQLIYDIYQY 548
           +GE  LY V V+ +  +   LQLSP   + D+ Q+
Sbjct: 76  EGEVHLYPVSVKTQSGEKLELQLSPGDSVIDVKQF 110


>01_01_0074 -
           561304-562131,562219-562425,563034-563084,563310-563408,
           564476-564622,564750-564851,565713-565928,566061-566192,
           566249-566310,567618-567746,568426-568567,568735-568830,
           568924-569000,569070-569148,569229-569297,569589-569703,
           570614-570777,570847-571002
          Length = 956

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 60  TPVDDVRAKFYSIEMNLWKNVTNPLWR 140
           TPVD+ RA  + +E +LWK + + L R
Sbjct: 187 TPVDEARAGLHIVEQSLWKAIPHYLRR 213


>01_01_0706 + 5442163-5442482,5443125-5443236,5444523-5444852
          Length = 253

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 353 YWSRHSARHRLTPH--EINKVLILAVDQL 273
           Y SRH A+  LT H  ++N VLI+ V Q+
Sbjct: 143 YQSRHDAQKALTKHGQQLNSVLIIGVKQV 171


>12_01_0306 + 2311687-2312130
          Length = 147

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 138 READLGGDVELTKVFASFDDYIQSIPIVSRPPI 236
           READ+ G+VE+ KV     D +  + +V+ P +
Sbjct: 106 READVVGEVEVAKVAGDARDGVARVDVVAPPQL 138


>05_01_0239 -
           1785699-1785980,1786061-1786284,1786380-1786526,
           1786667-1786775,1786880-1786981,1787090-1787164,
           1787277-1787453,1787534-1787623,1787717-1787844,
           1787909-1788356
          Length = 593

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -2

Query: 510 VAMSKHLIPPPVLRPGKALLRL 445
           ++MSK L PPP   PG AL RL
Sbjct: 1   MSMSKLLSPPPTSPPGPALSRL 22


>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
          Length = 463

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 208 DWI*SSKDAKTFVSSTSPPKSASRHSGLVTFFHR 107
           +W+   +     +S  SPP S S H G V + HR
Sbjct: 268 EWLNYHQRYYRLMSKVSPPTSGSWHKGCVMYAHR 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,152,417
Number of Sequences: 37544
Number of extensions: 364091
Number of successful extensions: 858
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)