Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_E21
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 277 7e-76
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 277 1e-75
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 43 4e-05
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 30 0.30
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 28 1.2
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.8
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 3.7
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 5.0
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 6.5
SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1... 25 8.7
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 8.7
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 277 bits (680), Expect = 7e-76
Identities = 132/183 (72%), Positives = 149/183 (81%)
Frame = -2
Query: 608 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 429
KTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKR
Sbjct: 10 KTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKR 69
Query: 428 LFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 249
LFEGNA LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI
Sbjct: 70 LFEGNAIIRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLI 129
Query: 248 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 69
QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG +
Sbjct: 130 FQRHIRVGKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGGEGEEA 189
Query: 68 EED 60
EE+
Sbjct: 190 EEE 192
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 277 bits (678), Expect = 1e-75
Identities = 132/182 (72%), Positives = 148/182 (81%)
Frame = -2
Query: 608 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 429
KTY PRRPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKR
Sbjct: 10 KTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKR 69
Query: 428 LFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILI 249
LFEGNA LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI
Sbjct: 70 LFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLI 129
Query: 248 RQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDE 69
QRHIRV KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR +GG E
Sbjct: 130 FQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGEGEEAE 189
Query: 68 EE 63
EE
Sbjct: 190 EE 191
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 42.7 bits (96), Expect = 4e-05
Identities = 28/123 (22%), Positives = 50/123 (40%)
Frame = -2
Query: 560 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAXXXXXXXXXX 381
+++ ++ Y + + E + + R+ A L L+ DP RL N
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 380 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 201
L K D + RRL + K +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 200 FIV 192
++V
Sbjct: 148 YLV 150
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 29.9 bits (64), Expect = 0.30
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 296 TPESEDGAPRSPQSSNRAHNPVSSVSHQALRPLPDDVVEHCLQTIS*DPSPRVSTVHG 469
+PE D +P +N P + +A++P+P + H QT P P V T HG
Sbjct: 393 SPEGYDNNRTNPTVNNLPSYPTNLARPKAIKPMPTSI--HG-QTSPLSPIPPVHTTHG 447
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 1.2
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 411 SIAFKQSLRILLLECQQFTGSLTDASERVLYAPHFTLVAETIL 539
SI F+ S RIL Q T LT S + HF ++ TIL
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 365 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 234
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +2
Query: 311 DGAPRSPQSSNRAHNPVSSVSHQALRPL 394
DGA S Q+ AHNP +SVS + +RP+
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRPV 115
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 5.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 347 AHNPVS-SVSHQALRPLPDDVVEHCLQTIS*DPSPRVSTVHGQP 475
AH +S +VSH LP D +E C++ D S + + G+P
Sbjct: 428 AHELISLNVSHNLSLDLPLDFMERCVKLKRLDISNNLRSPRGKP 471
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -1
Query: 276 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEEPA 103
V+ + P +++ + P GG HS + RP R + LLS A + + E+P+
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLSTDAFSQFISSFSPPEKPS 169
>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
complex subunit Tpr1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1039
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 368 VSHQALRPLPDDVVEHCLQTI 430
+S Q RP+ D V HC QT+
Sbjct: 591 LSKQKRRPVEDPEVRHCSQTL 611
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 303 SGVQGWSCEVNPSCP 259
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,976,339
Number of Sequences: 5004
Number of extensions: 39041
Number of successful extensions: 138
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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