Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E20
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    24   8.6  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    24   8.6  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    24   8.6  

>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = +3

Query: 111 HDETYDRHFLDMYVTKMNEELREKDRSTFSVDQLVLTCTDYM 236
           HD+T D H L  +V+  N      D    S+ + V   + ++
Sbjct: 348 HDDTVDSHLLHSFVSAENANEPTNDVDDNSLQEQVADASQFV 389


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  IVSEVIATHDETYDRHFLDMYVTKMNE 167
           IV+  I +HDE YDR    +++  + E
Sbjct: 587 IVNGRIISHDENYDRSMYGIFLEDIPE 613


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 295 YSQRFKTKYTKKSTGLLGEIVCQH 366
           Y + F+   TKK+T    EIV +H
Sbjct: 390 YEKAFRDYSTKKTTRTFAEIVLKH 413


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 146 HIQKMTVIGFVVRCYNFTYNF 84
           ++ K T + ++++CYNF   F
Sbjct: 147 YLNKNTAVDWLMKCYNFDGGF 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,415
Number of Sequences: 5004
Number of extensions: 24852
Number of successful extensions: 59
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)