Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_E20
(370 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_1035 - 21887562-21890030 27 3.5
04_03_0481 + 16433648-16433746,16435136-16435394,16435883-164362... 27 3.5
05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656 27 4.6
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 27 4.6
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 27 6.1
10_08_0424 - 17803984-17805270 26 8.1
08_02_1481 - 27413397-27413414,27413738-27414367,27414471-27415484 26 8.1
04_03_0476 - 16363811-16364101,16364515-16364763,16365008-163651... 26 8.1
02_04_0244 - 21248449-21249038,21249240-21249438,21249963-212502... 26 8.1
>04_03_1035 - 21887562-21890030
Length = 822
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 240 GTCNPYKSILAGPLKMCFDLFLSTPRSS*LRTYPKND 130
GTC+PY +++AG +C S+P S +R + N+
Sbjct: 87 GTCSPYSAVVAGDGYLCSAAPTSSPPMS-MRWWDLNE 122
>04_03_0481 +
16433648-16433746,16435136-16435394,16435883-16436261,
16436498-16436716,16436814-16436949,16437502-16437717,
16437773-16437835
Length = 456
Score = 27.5 bits (58), Expect = 3.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 78 FRKIVSEVIATHDETYDRHFLDMYVTKMNEELREKDRSTFSV 203
F KI+ +I D+TYD H K+NE ++ + S SV
Sbjct: 287 FTKIIVLIIMM-DDTYDSHATIQECRKLNEAIQRWNESAVSV 327
>05_05_0327 + 24126075-24126453,24128037-24128431,24129009-24129656
Length = 473
Score = 27.1 bits (57), Expect = 4.6
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = +3
Query: 315 KIHEEIDRAVGRDRL 359
K+ EE+DR VGRDR+
Sbjct: 288 KLQEELDRVVGRDRV 302
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 27.1 bits (57), Expect = 4.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 99 VIATH-DETYDRHFLDMYVTKMNEELREKDRSTFSV 203
V+AT D+TYD H + K+NE ++ D S SV
Sbjct: 231 VLATLLDDTYDMHAILEEGQKLNEAIQRWDESAISV 266
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 26.6 bits (56), Expect = 6.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 96 EVIATHDETYDRHFLDMYVTKMNEELREKDR 188
E A ETY R + V + E L+EK+R
Sbjct: 711 EYKALDSETYSRELFEECVVHLKERLKEKER 741
>10_08_0424 - 17803984-17805270
Length = 428
Score = 26.2 bits (55), Expect = 8.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 9 KDVLPNYSGYNALRKG 56
KDV PNY YNAL +G
Sbjct: 288 KDVAPNYLTYNALVQG 303
>08_02_1481 - 27413397-27413414,27413738-27414367,27414471-27415484
Length = 553
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 315 KIHEEIDRAVGRDRLPT 365
++H+E+DR VG DR T
Sbjct: 368 RVHDELDRVVGSDRAVT 384
>04_03_0476 -
16363811-16364101,16364515-16364763,16365008-16365143,
16365552-16365770,16366210-16366588,16366909-16367089
Length = 484
Score = 26.2 bits (55), Expect = 8.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +3
Query: 75 FFRKIVSEVIATH---DETYDRHFLDMYVTKMNEELREKDRSTFSV 203
F R V+++IA D+TYD H ++N ++ D+S S+
Sbjct: 223 FTRMFVAKIIALDTVMDDTYDAHATVEECRQLNTAIQRWDKSAISI 268
>02_04_0244 -
21248449-21249038,21249240-21249438,21249963-21250212,
21250552-21250577
Length = 354
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 156 KMNEELREKDRSTFSVDQLVLTCTDYMF 239
++N L + DRSTF V+ TDY F
Sbjct: 323 ELNAPLNKYDRSTFYTSDPVIGYTDYPF 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,535,892
Number of Sequences: 37544
Number of extensions: 139535
Number of successful extensions: 282
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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