Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E19
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   4.0  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    25   6.9  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    24   9.1  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    24   9.1  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 171 WTTCSTRLNWCICDAHTRFFN 233
           W T S  LN C   + T +FN
Sbjct: 328 WATLSPYLNLCCASSETEYFN 348


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -2

Query: 227 ESCVRVADAP-I*SCGTC 177
           ESC+RV +AP +  CG C
Sbjct: 404 ESCIRVQNAPSLIKCGVC 421


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 KNMQYSSSFRNFNTVGAGVDYMFHKIKLVH 205
           K  Q+ SS  +F     G+D  F+  +++H
Sbjct: 13  KKHQHKSSLSSFQNCKLGIDASFYLTQIIH 42


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 327 NGVSNFFQPALKSSD 283
           +G+S  FQP LK+SD
Sbjct: 91  SGISKSFQPVLKTSD 105


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 103 FGTEIVVVVMEEIYLPHRFVPPCRSAPGITSSR 5
           FG +I  VVM  ++ PHR +       G T  R
Sbjct: 421 FGRKIHFVVMNNLFPPHRDIHQTFDLKGSTLGR 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,923
Number of Sequences: 5004
Number of extensions: 35339
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)