Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E19
         (444 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-7|AAD14768.2|  519|Caenorhabditis elegans Hypothetical ...    30   0.66 
U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula (ubiq...    27   8.1  

>AF125971-7|AAD14768.2|  519|Caenorhabditis elegans Hypothetical
           protein Y4C6B.6 protein.
          Length = 519

 Score = 30.3 bits (65), Expect = 0.66
 Identities = 22/75 (29%), Positives = 36/75 (48%)
 Frame = +2

Query: 89  DFSAKAFATKNMQYSSSFRNFNTVGAGVDYMFHKIKLVHLRRAHTIL*RQISLGGKLNLF 268
           DFS   ++  ++++    +NFN     + Y     K+  +++A T      + GGKL LF
Sbjct: 148 DFSTHEYSYDDVKFDFDLKNFNLTVEDLQY-----KIPFIKKAMT------ASGGKLKLF 196

Query: 269 KTPTTSLDFNAGWKK 313
            TP +S     GW K
Sbjct: 197 ATPWSS----PGWMK 207


>U13875-1|AAA21162.2|  541|Caenorhabditis elegans Yeast ula
           (ubiquitin activating)homolog protein 1 protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 141 SETSTLSVPEWTTCSTRLNWCICDAHTRF 227
           S  S LS P+ +T STR  W IC+A  RF
Sbjct: 283 SVKSILSSPQCST-STRPFWLICEALRRF 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,967,012
Number of Sequences: 27780
Number of extensions: 207158
Number of successful extensions: 480
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)