Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E19
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    25   0.49 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    24   0.65 
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   0.86 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   4.6  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 2   RSRTSDPRRGSAGRDKTVR*VNLFHNNNHDFSAKAFATKN 121
           R R+ +P+  S+  +KT+   N ++NNN++   K +   N
Sbjct: 73  RERSREPKIISSLSNKTIHNNNNYNNNNYNNYKKLYYNIN 112


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 2   RSRTSDPRRGSAGRDKTVR*VNLFHNNNHDFSAKAFATKN 121
           R R+ +P+  S+  +KT+   N ++NNN++ +   +   N
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNN 345


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 2   RSRTSDPRRGSAGRDKTVR*VNLFHNNNHD 91
           R R+ +P+  S+  +KT+   N ++NNN++
Sbjct: 73  RERSREPKIISSLSNKTIHNNNNYNNNNYN 102


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 121  HAIFLKFPKLQHCRCRSGLHVPQD 192
            HA+   +P++        LH+P+D
Sbjct: 1468 HAVMTTYPRINPDNHNEKLHIPKD 1491


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 342 HEDLMNGVSNFFQPALKSSDVVGV 271
           ++DL++  +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 342 HEDLMNGVSNFFQPALKSSDVVGV 271
           ++DL++  +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 65  NLFHNNNHDFSAKAFATKNMQYSSSFRNFNT 157
           +L++ N   F    +   N+QY      FNT
Sbjct: 275 SLYYVNTKPFMKSEYGANNVQYQGVQDIFNT 305


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,751
Number of Sequences: 438
Number of extensions: 2266
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)