Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E18
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.35 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.82 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.5  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   7.6  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   7.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.4 bits (53), Expect = 0.35
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 83  YYTPERNPKEADYTAPIYAPQN 148
           Y+  E++PK+   T P  APQN
Sbjct: 302 YFRAEKDPKKMPCTQPPSAPQN 323


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 179 INYWIQNGAPTHKLVLGIST--TGRTWKLDSDSEISGV 286
           +++WI   A + ++ LGI+T  T  T  LDS +++  V
Sbjct: 264 VSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKV 301


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +2

Query: 179 INYWIQNGAPTHKLVLGIST 238
           +++WI + A + ++ LGI+T
Sbjct: 261 VSFWINHEATSARVALGITT 280


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 INYWIQNGAPTHKLVLGIST 238
           +++W+   A   ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 INYWIQNGAPTHKLVLGIST 238
           +++W+   A   ++ LG++T
Sbjct: 240 VSFWLNRNATPARVALGVTT 259


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 8/34 (23%)
 Frame = -2

Query: 496 NPEATFTMIIRKAEG--------IGPKTFARIVD 419
           +P+A F+ +++KAE         +GPK    ++D
Sbjct: 62  SPDAMFSQVLKKAENFKDVVKIWVGPKLVICLID 95


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 5/20 (25%), Positives = 13/20 (65%)
 Frame = +2

Query: 179 INYWIQNGAPTHKLVLGIST 238
           +++W+   A   ++ LG++T
Sbjct: 179 VSFWLNRNATPARVALGVTT 198


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +2

Query: 257 LDSDSEISGVPPIHADEGGEAGPYTKVQGL 346
           +  D  + G+ P+H   G   GP    +G+
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,194
Number of Sequences: 438
Number of extensions: 3294
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)