Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E17
         (165 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    24   3.1  
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo...    23   4.1  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    23   4.1  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    23   7.1  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    23   7.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   7.1  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    23   7.1  
SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyce...    22   9.4  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    22   9.4  

>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +2

Query: 11  WSASTAGTCSLKSLVTTLNNMRISRSSGP 97
           W      T  LKSL    NN+R+   S P
Sbjct: 99  WDPLQLSTARLKSLCLYRNNVRVLNISNP 127


>SPAC26H5.07c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 505

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 94  PTAPADPHIVQCS 56
           PT+PA+PHI+  S
Sbjct: 464 PTSPANPHIIHGS 476


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 23  TAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKR 121
           T  +  +KSLV   +   IS+ +GP    AGK+
Sbjct: 85  TGKSTLIKSLVRRYSKYTISQITGPITVVAGKK 117


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/14 (50%), Positives = 7/14 (50%)
 Frame = +3

Query: 123 CTNCQLRRHLRCYG 164
           C NC    H  CYG
Sbjct: 214 CDNCNTSVHQNCYG 227


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +1

Query: 46  EPGYYIEQYEDQPEQ 90
           EP +Y E+ E++PE+
Sbjct: 788 EPSHYEEEEEEEPEE 802


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/22 (31%), Positives = 11/22 (50%)
 Frame = +2

Query: 2   QFFWSASTAGTCSLKSLVTTLN 67
           +FFW       CS+   +T L+
Sbjct: 594 EFFWRKKATSVCSVPKSITDLH 615


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 93  GQLQGAPASGCTNCQLRRH 149
           GQL  +P     NC L+RH
Sbjct: 21  GQLSTSPPRRWRNCTLQRH 39


>SPBP4H10.21c |sld5||GINS complex subunit Sld5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 214

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 37  LVEEPGYYIEQ-YEDQPEQWANSRV 108
           L+ EP   +E  YED   QW N R+
Sbjct: 8   LLIEPTTEVENDYEDLCTQWVNERM 32


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 103 WSWPTAPADPHIVQCSNQALQRART 29
           W  P  P DPH V     A+ R  +
Sbjct: 377 WKVPYLPLDPHDVNSEYAAIIRVNS 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,441
Number of Sequences: 5004
Number of extensions: 7990
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 35
effective length of database: 2,187,338
effective search space used: 41559422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)