Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_E17
(165 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0996 + 33667663-33667900,33668019-33668091,33668785-336688... 29 0.67
02_05_0359 - 28269236-28269541,28270857-28270919,28271439-282714... 28 0.89
03_02_0798 - 11321590-11321685,11321802-11321888,11321972-113220... 28 1.2
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 27 2.0
02_04_0256 + 21331396-21332268 27 2.0
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 26 3.6
08_02_1583 + 28036125-28037030,28037411-28037656 26 3.6
08_01_0759 - 7199085-7199414 26 3.6
08_01_0755 - 7159471-7160124 26 3.6
07_01_0476 - 3593555-3594253,3594684-3594850,3594866-3594964,359... 26 4.7
02_05_0432 + 28936293-28936796,28937382-28939250 26 4.7
02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429 26 4.7
09_04_0454 + 17722587-17722856,17723228-17723362 25 6.2
>01_06_0996 +
33667663-33667900,33668019-33668091,33668785-33668841,
33668970-33669067,33669482-33669637,33669744-33670366,
33670484-33670560,33671551-33671805,33671950-33672067,
33672174-33672345,33672434-33672975
Length = 802
Score = 28.7 bits (61), Expect = 0.67
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 8 FWSASTA-GTCSLKSLVTTLNNMRISRSSGPT 100
FW ST CS L+ LNN +SR +GP+
Sbjct: 40 FWPRSTKWALCSEVDLIGPLNNWTLSRLTGPS 71
>02_05_0359 -
28269236-28269541,28270857-28270919,28271439-28271459,
28271660-28271716,28271789-28271874,28271982-28272039,
28272176-28272311,28272799-28273073,28273564-28273602,
28274052-28274143,28274422-28274454,28275041-28275088,
28275191-28275323
Length = 448
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 115 AGAPWSWPTAPADPHIVQCSNQALQRARTG 26
AG PW+W +PA + +C A +R TG
Sbjct: 408 AGGPWTWRESPASRAMQKC--PACKRTHTG 435
>03_02_0798 -
11321590-11321685,11321802-11321888,11321972-11322082,
11322169-11322515,11322570-11322612,11322669-11322749,
11323321-11323596,11325277-11325552
Length = 438
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -3
Query: 121 PLAGAPWSWPTAPADPHIVQCSNQALQR 38
PL+GAP P AP P + C AL +
Sbjct: 15 PLSGAPRRRPAAPTRPSALVCGTYALTK 42
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 10 LVGVNSRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGA 159
L G+ SR V P + ++ Y D+ EQW R R + L ++ + + G+
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGS 931
>02_04_0256 + 21331396-21332268
Length = 290
Score = 27.1 bits (57), Expect = 2.0
Identities = 17/38 (44%), Positives = 21/38 (55%)
Frame = -1
Query: 120 RLPAHPGVGPLLRLILILFNVVTRLFNEHVPAVDADQK 7
RL AHPG P +RLIL+ + + LF A AD K
Sbjct: 143 RLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLK 178
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -3
Query: 94 PTAPADPHIVQCSNQALQRARTG 26
PTAP H + CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>08_02_1583 + 28036125-28037030,28037411-28037656
Length = 383
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -3
Query: 121 PLAGAPWSWPTAPAD 77
PLA SWPT+PAD
Sbjct: 179 PLAAVVESWPTSPAD 193
>08_01_0759 - 7199085-7199414
Length = 109
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 130 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 26
+V P A AP P+A A + C + ALQ R G
Sbjct: 31 VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65
>08_01_0755 - 7159471-7160124
Length = 217
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 130 LVHPLAGAPWSWPTAPADPHIVQCSNQALQRARTG 26
+V P A AP P+A A + C + ALQ R G
Sbjct: 31 VVLPPAAAPGEAPSADAAAFVRSCCDTALQADRDG 65
>07_01_0476 -
3593555-3594253,3594684-3594850,3594866-3594964,
3595620-3595806,3595880-3595948,3596551-3596752,
3597124-3597362,3598374-3598637
Length = 641
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 99 LQGAPASGCTNCQLRRHLRCYG 164
L G P G N + +LRCYG
Sbjct: 302 LNGVPGCGFLNHAINLYLRCYG 323
>02_05_0432 + 28936293-28936796,28937382-28939250
Length = 790
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 40 VEEPGYYIEQYEDQPEQWANSRV 108
V P + + E+ PEQW SR+
Sbjct: 97 VRSPELVVPELEELPEQWRRSRI 119
>02_01_0669 + 4974567-4974610,4975142-4975211,4975355-4975429
Length = 62
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 78 SAGAVGQLQGAPASGCTNCQLRRHL 152
++ ++GQ Q A A+G T C +RR++
Sbjct: 13 TSSSMGQGQQASANGVTACNIRRNI 37
>09_04_0454 + 17722587-17722856,17723228-17723362
Length = 134
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = -1
Query: 99 VGP--LLRLILILFNVVTRLFNEHV 31
VGP LRL+L FN++++ F H+
Sbjct: 43 VGPAVFLRLVLYSFNIISQAFAGHI 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.368
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,566,715
Number of Sequences: 37544
Number of extensions: 64956
Number of successful extensions: 206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 35
effective length of database: 13,479,308
effective search space used: 256106852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
- SilkBase 1999-2023 -