Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E17
         (165 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical pr...    27   2.4  
AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical ...    26   3.1  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine rece...    25   7.2  

>Z69903-1|CAA93772.1|  137|Caenorhabditis elegans Hypothetical
           protein F46F2.3 protein.
          Length = 137

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 84  GAVGQLQGAPASGCTNCQLRR 146
           G +G L GAPA GC  C   R
Sbjct: 22  GGLGGLFGAPAGGCDPCAAAR 42


>U10401-5|AAA19060.1|  238|Caenorhabditis elegans Hypothetical
           protein T20B12.7 protein.
          Length = 238

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 90  VGQLQGAPASGCTNCQLRRHLRC 158
           +GQ+   P S C NC L    RC
Sbjct: 191 MGQIAAEPKSSCGNCSLGDAFRC 213


>AF016425-6|AAY86242.1|  104|Caenorhabditis elegans Hypothetical
           protein F59A7.11 protein.
          Length = 104

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 49  PGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTS 153
           PG   +  ED  +     R RR  G  TV +DG++
Sbjct: 22  PGQQADHVEDLTKNRNEPRARRDLGTETVRADGSA 56


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 5   FFWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCA 112
           F W  ST   C L SL    N +R S SS P   CA
Sbjct: 15  FAWCRSTR-QCQLSSLSPRRNPLRGSFSSRPYHSCA 49


>U80028-8|AAN73866.1|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein118 protein.
          Length = 378

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 97  WPTAPADPHIVQCSNQALQRARTG 26
           W TA   P+I+  S   + R++TG
Sbjct: 247 WKTAKKRPNIISVSKSNISRSKTG 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,668,269
Number of Sequences: 27780
Number of extensions: 50645
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 12,740,198
effective HSP length: 35
effective length of database: 11,767,898
effective search space used: 223590062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)