Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E17
         (165 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   1.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    19   4.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    19   4.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   4.2  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    18   9.7  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/36 (25%), Positives = 14/36 (38%)
 Frame = +1

Query: 58  YIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMV 165
           Y      + E W N+ V R       NS+  + + V
Sbjct: 264 YFHSLASRVESWVNTSVIRNYTLFNENSEAAARSFV 299


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 161 IAPEVPSELTVSAPACRRTLELAHCSG 81
           +A  V S   VS+P   R   +  C+G
Sbjct: 381 VAAAVQSSSIVSSPDSARHQRIGGCNG 407


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding
          protein ASP5 protein.
          Length = 143

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -1

Query: 87 LRLILILFNVVTRLFNEHVPAVDADQ 10
          ++ +L+L  +VT +  + V ++ ADQ
Sbjct: 3  VKSVLLLITIVTFVALKPVKSMSADQ 28


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 94   PTAPADPHIVQCSNQAL 44
            P +PAD  +V  S QAL
Sbjct: 1214 PGSPADIKVVVSSPQAL 1230


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 94   PTAPADPHIVQCSNQAL 44
            P +PAD  +V  S QAL
Sbjct: 1210 PGSPADIKVVVSSPQAL 1226


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 40  VEEPGYYIEQYEDQPEQWANSRVRRQAGALTVN 138
           V    +YI   E  P+   N  +RR+    TVN
Sbjct: 210 VRNEAFYICCEEPYPDIVFNITLRRKTLFYTVN 242


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.129    0.368 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,044
Number of Sequences: 438
Number of extensions: 554
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 34
effective length of database: 131,451
effective search space used:  2629020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)