Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E16
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    29   4.1  
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458...    28   7.2  
11_06_0148 + 20631949-20632338,20632838-20633044,20633168-206332...    27   9.5  
05_03_0544 + 15239186-15239589,15242963-15243188                       27   9.5  

>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -1

Query: 140 TIIVCLTDNHTFGLHYGNNAY**YKDFVHFKTH 42
           T+++CL D+HTF  H+  +    YK ++  K H
Sbjct: 273 TLLLCLGDSHTFNTHFSQHMEILYK-YLKDKNH 304


>09_06_0067 -
           20645012-20645095,20645365-20645466,20645583-20645828,
           20646042-20646236,20646343-20646636,20646952-20647134,
           20647534-20647593,20647796-20648002,20648081-20648282,
           20648367-20648494,20648759-20648842,20648955-20649134,
           20649281-20649372,20649620-20649789,20650226-20650337,
           20650451-20650554,20651262-20651371
          Length = 850

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 382 ISTTYLNPDPLSLFSLMLTKSRPNPPRLIDASA 284
           IS TY NP P+ +   ML K    PPR  D+ A
Sbjct: 620 ISNTYENPSPMIVDEAMLEKVL-GPPRFDDSEA 651


>11_06_0148 +
           20631949-20632338,20632838-20633044,20633168-20633267,
           20633478-20633560,20633656-20633712,20633790-20633942,
           20634016-20634094,20634279-20634427,20634541-20634675,
           20634783-20634896,20635065-20635175,20635338-20635373,
           20635675-20635884
          Length = 607

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 132 DYSGVVRKVYERVIESSAIPLIKRVEEVYF 221
           D+ G+ RK YE+  E  A  +IKR+E+  F
Sbjct: 449 DWEGLSRKDYEKKKELVATEIIKRLEKKLF 478


>05_03_0544 + 15239186-15239589,15242963-15243188
          Length = 209

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -1

Query: 611 ILIIHYFLLFTLQQTDLATLITKSINVIGYTWLFFDE-LLQINFQTQT 471
           +LIIH F +  +Q T     +  S++++GY   + +  +L ++FQ  T
Sbjct: 157 LLIIHIFGVNLIQVTHFTLCVDISLSLLGYHACYHENIMLGVSFQLTT 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,548,434
Number of Sequences: 37544
Number of extensions: 276340
Number of successful extensions: 551
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)