Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_E10
(448 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 27 1.3
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa... 27 1.7
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 26 3.0
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 25 4.0
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 4.0
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 5.3
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 5.3
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 5.3
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe... 25 7.0
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 24 9.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 24 9.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 24 9.3
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 24 9.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 24 9.3
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 24 9.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 24 9.3
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 87 IVIRNNNYEKQV-LKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYG 263
I+++ NY+ + L++D H Y +D+ + SPE + + ++ + NE+
Sbjct: 292 IILQGTNYDTCLELQADGH--YVRMVDFYGQPRLYIRSPEADSERIINFPEDDPYYNEFD 349
Query: 264 EIAGITNG 287
G+ G
Sbjct: 350 AFLGVVQG 357
>SPBC21C3.18 |spo4||serine/threonine protein kinase
Spo4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 1.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 81 DVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFN 242
D+I N E +L++ LAID + S V KT L+ +FN
Sbjct: 351 DLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKAKTALQHEFFN 404
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 3.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 282 NGMANAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITD-SSIWQMFF 422
+G ++ S +HK+ G V +D T K +TD + IW + F
Sbjct: 629 SGYISSFVSDEHKIISGNDGSVKLWDVRTGKLLRFLLTDLTKIWHVDF 676
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 4.0
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +1
Query: 82 TLS*FGTTIMKNKFSRATCTILTN*QSTTRPAQYFSVYLPK*TVKLF*NPLTSIQKQMNM 261
T+ F T+MKNKF ST Q FS +L K +L + S Q ++
Sbjct: 291 TILPFSVTLMKNKFGNFLIQKCFE-YSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349
Query: 262 EKSPE 276
E PE
Sbjct: 350 EIYPE 354
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 150 QLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITN 284
++++ Y ++ +F ++ ++N VLK + NT+ NEY + I N
Sbjct: 256 RMSLYYDSNELFKKMTDDLN--YVLKFPFDNTRGNEYEKEQKIRN 298
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.0 bits (52), Expect = 5.3
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 149 VRIVHVALENLFFIIVVPNYDNVTFLLISAFRE 51
VR+ AL N F VPNYD+V + + FR+
Sbjct: 290 VRLARPALINAFG---VPNYDSVVPMYTTVFRD 319
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 5.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 348 YTYDYTTKKATNLGITDSSIWQMFFCP 428
+ Y+ +T++ +L TDS +W+ F P
Sbjct: 439 WNYEKSTEEPEHLITTDSPVWKARFTP 465
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 5.3
Identities = 12/51 (23%), Positives = 29/51 (56%)
Frame = +3
Query: 219 VLKSAYFNTKTNEYGEIAGITNGMANAVDSIDHKVYLGGKDGVYTYDYTTK 371
V + Y ++TN+ + G++ +ANA D + +L +DG++ + ++ +
Sbjct: 1278 VSRMNYVASQTNKKVRVLGLSTAVANANDLAN---WLNIRDGLFNFRHSVR 1325
>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 7.0
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Frame = +3
Query: 123 LKSDVHNPYQLAIDYQ-----------TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEI 269
L D H P+Q+ ++Y TS P+ NG TV+K+ T N + +
Sbjct: 242 LSDDSHGPHQVGLNYHLAKSYLDKCGITSLCMIEKGPDGNG-TVVKNV---TVDNVWSKF 297
Query: 270 AGITNGMAN 296
G TNG+ N
Sbjct: 298 VG-TNGITN 305
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 MAWLTLWTVSTTKFISEAKMEFTR---TITLP 369
M++ T W + +T AK+EF+ TI LP
Sbjct: 128 MSFFTAWVIFSTILTKRAKIEFSTFLPTILLP 159
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 MAWLTLWTVSTTKFISEAKMEFTR---TITLP 369
M++ T W + +T AK+EF+ TI LP
Sbjct: 128 MSFFTAWVIFSTILTKRAKIEFSTFLPTILLP 159
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 66 DKKKCDVIVIRNNNYEKQVLKSDVHNPYQLAIDYQ 170
D+K+ +I R+N E + LKS++ + +L ++YQ
Sbjct: 1273 DEKRKALIASRDNE-ELRSLKSELESKRKLEVEYQ 1306
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.2 bits (50), Expect = 9.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 195 SPEVNGKTVLKSAYFNTKTNEYGE 266
SPEV+ + ++K + TKTNE E
Sbjct: 70 SPEVHFEPIVKLSAVETKTNEEEE 93
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 MAWLTLWTVSTTKFISEAKMEFTR---TITLP 369
M++ T W + +T AK+EF+ TI LP
Sbjct: 128 MSFFTAWVIFSTILTKRAKIEFSTFLPTILLP 159
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 24.2 bits (50), Expect = 9.3
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +3
Query: 177 TIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGI---TNGMANAVDSI 311
+IF + + + + +A+F++KTNE I G+ G ++ VD +
Sbjct: 16 SIFLKATAQTHPIVIKGNAFFDSKTNERFYIRGVDYQPGGSSSLVDPL 63
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.2 bits (50), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +1
Query: 283 MAWLTLWTVSTTKFISEAKMEFTR---TITLP 369
M++ T W + +T AK+EF+ TI LP
Sbjct: 128 MSFFTAWVIFSTILTKRAKIEFSTFLPTILLP 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,957,252
Number of Sequences: 5004
Number of extensions: 40240
Number of successful extensions: 126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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