Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_E10
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0376 - 20754386-20755392,20755683-20756320,20756433-207566... 29 1.3
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209... 29 2.3
06_01_0137 - 1045301-1047601 29 2.3
06_01_0124 - 958935-959967,959985-961222 29 2.3
11_06_0247 - 21669299-21669348,21669673-21670012,21670110-216701... 28 3.0
09_02_0418 - 8926087-8926112,8926327-8926387,8926960-8927196 27 6.9
06_01_0504 + 3632108-3632281,3633532-3633699,3633797-3633883,363... 27 6.9
01_06_0895 - 32804433-32804744,32804948-32805163,32805301-328056... 27 9.1
>05_04_0376 -
20754386-20755392,20755683-20756320,20756433-20756627,
20757730-20757795,20757942-20758007,20758402-20758445
Length = 671
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 147 YQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMANAVDSIDH 317
Y ++D Q ++ +L +G LK N + EYG A + G A ++ ++H
Sbjct: 141 YVSSVDVQWEDVYKALENLNDGSQKLKVGLLNFNSTEYGSWAQLLPGSAVSIVRLEH 197
>12_02_0795 +
23217463-23217684,23218296-23219155,23220001-23220929,
23221184-23221968
Length = 931
Score = 28.7 bits (61), Expect = 2.3
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 30 IFVWLFVFAEGGDKKKCDVI-VIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEV 206
+ + L EG +K VI ++ K L ++V +L +Q F SLS +
Sbjct: 264 VVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFR--KLESQFQCRA-FVSLSQQP 320
Query: 207 NGKTVLKSAYFNTKTNEYGEI 269
+ K ++++ Y EYG I
Sbjct: 321 DVKKIVRNIYCQVSQQEYGNI 341
>06_01_0137 - 1045301-1047601
Length = 766
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 171 TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 287
T+ ++ +++ E+ + LK YF+T YG++ I G
Sbjct: 634 TARVYGTMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 672
>06_01_0124 - 958935-959967,959985-961222
Length = 756
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +3
Query: 171 TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNG 287
T+ ++ +++ E+ + LK YF+T YG++ I G
Sbjct: 624 TARVYGAMTTELKRELGLKGYYFSTDATRYGKMMAIAGG 662
>11_06_0247 -
21669299-21669348,21669673-21670012,21670110-21670199,
21670280-21670339,21670564-21670856,21671176-21671245,
21671623-21671970,21673188-21673318,21673418-21673901,
21674839-21675558
Length = 861
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 344 SLHVRLHYQESYKPRYHRL*HMANVFLPSSW 436
S+H+ LH + PR HRL H++ P W
Sbjct: 11 SIHLHLHLHLHHPPRLHRLLHLSTT-SPYPW 40
>09_02_0418 - 8926087-8926112,8926327-8926387,8926960-8927196
Length = 107
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 52 SRKAEIRRNVTLS*FGTTIMKNKFSRATCTILTN*QSTTRPAQYF 186
+RK + R ++ L I++NK+ ATC+I++ S+T QYF
Sbjct: 2 TRKTQ-RNDLGLGSMTENIVRNKY--ATCSIVSRMPSSTGTGQYF 43
>06_01_0504 +
3632108-3632281,3633532-3633699,3633797-3633883,
3634766-3634876,3635114-3635205,3635288-3635393,
3635475-3635561,3637796-3638209
Length = 412
Score = 27.1 bits (57), Expect = 6.9
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Frame = +3
Query: 51 FAEGGDKKKCDVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKS 230
FA G K C V +RN + VL+ ++ I Y + F S + V +
Sbjct: 299 FATGNQDKTCRVWDVRNLSTSLSVLRGNI--GAIRCIRYSSDGQFMLFSEPADFVHVYSA 356
Query: 231 AYFNTKTNE---YGEIAGITNGMANAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITDS 401
A K E +GEI+GI ++ D +++G D VY + + G DS
Sbjct: 357 AADYKKRQEIDFFGEISGI------SLSPDDESLFVGVCDRVYASLLHYRMVHSFGYLDS 410
>01_06_0895 -
32804433-32804744,32804948-32805163,32805301-32805642,
32805778-32806020,32806130-32806582,32806898-32807113,
32808360-32808432,32808750-32808790,32809027-32809118,
32809222-32809333,32810003-32810078,32810154-32810301,
32811195-32811336,32812120-32812196,32813568-32813619
Length = 864
Score = 26.6 bits (56), Expect = 9.1
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 177 TIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITNGMANAVDSIDHKVYLGGKDGVY 350
T +FS S + G TV+KS F+T +G T ++ + V G+DG Y
Sbjct: 589 TGYFS-STMIMGSTVIKSLTFHTTKKSHGPFGDETGTFFSSCLTEGRIVGFHGRDGWY 645
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,939,255
Number of Sequences: 37544
Number of extensions: 231373
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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