Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E07
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    29   0.59 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.3  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   7.3  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   9.7  

>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +2

Query: 311 MSTATELPSTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTVG 490
           +S+ T  PST+     I    ++ G   L  NN       AF + +  T +   S++++ 
Sbjct: 183 LSSYTPGPSTSRR--SISSSSNLGGNPGLIANNPSASKNFAFTSGSSSTNNSTTSSSSMA 240

Query: 491 GGLEYMFKDKIGASASAAHTDFFNKN 568
            GL+ + K        +  T FF +N
Sbjct: 241 NGLQSISKHSAAFPLLSNATSFFGEN 266


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = +2

Query: 320 ATELPSTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATRNMPTISHLPSTNTV 487
           +T   ST T   G GDK S AGK N+   +    S  +    +    S+ PS N+V
Sbjct: 255 STTATSTLTDA-GFGDKSSTAGKHNVETTSPPSSSPNSDDAYSPQVDSYSPSINSV 309


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 500 EYMFKDKIGASASAAHTDFFNKNDYXLGGKLNLFKTPSTSLDFTAG 637
           E++  +  G S+++   +F   N   L   L+LF +PS+    TAG
Sbjct: 223 EFLLPNLFGNSSTSPQDNFGTSNS-ALSRNLDLFGSPSSENKSTAG 267


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 453 PPFPIYHQPTLLVVVSNICSRTRSVHQRAPL 545
           P F      +     + +C +TRS HQ+ PL
Sbjct: 404 PAFAFLRFDSQQAAYAAVCGKTRSPHQKKPL 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,894
Number of Sequences: 5004
Number of extensions: 57400
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)