Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E07
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0143 + 28000038-28000211,28002217-28002230,28002713-280027...    33   0.27 
01_05_0129 + 18431820-18432224                                         31   0.61 
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330...    29   2.5  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   3.3  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   5.7  
11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495     28   7.6  

>05_07_0143 +
           28000038-28000211,28002217-28002230,28002713-28002788,
           28003304-28003865,28004476-28004761,28004848-28005118,
           28005478-28005633,28005871-28006368,28006809-28007093
          Length = 773

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +1

Query: 139 RVRRQAGELTINSD-GTSGAMVKVPITGNENHKLSALGSVDLTNQIKLGAATAGLVYDNV 315
           +V++ + +  + +D G +G    +P T N+N K SA  +V  TN  +   +    ++   
Sbjct: 110 QVKQSSSKPAVTADKGYTGQYPSLPSTVNQNLKQSA-STVSPTNPDQGLHSAQDSIHPKD 168

Query: 316 NRHGATLNKHSYSWNW 363
           + H A +NK +Y  +W
Sbjct: 169 HNHSAAVNKQAYDNDW 184


>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 426 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 518
           RRR RP   PP P  H P   V+V+   +RT
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARART 34


>07_03_0251 +
           15831712-15832127,15832203-15832344,15832692-15833056,
           15833134-15833293,15833699-15834036,15834138-15834315,
           15834454-15834987,15835176-15836291
          Length = 1082

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -2

Query: 450 IFLVANAFADKSWSLL*NRFTLPATDNLSPIPGI*VFVEGSSVAVDIIVN 301
           + L  N  +DK W+ L  +F L A     P     +FVEG    +DI+V+
Sbjct: 470 VSLAKNPASDKQWTHLKGKFLLHA-----PFSKAVIFVEGPPAGIDILVD 514


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 440 SRTPSRINHGRCYETGSLYQQQTI 369
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 134 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 265
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


>11_08_0010 + 27605105-27607919,27607954-27608013,27608110-27608495
          Length = 1086

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 113 NSRSSGPVPGCAGKRVNLQLILME 184
           N+  SGP+PGC G    LQ ++++
Sbjct: 208 NNSLSGPIPGCIGSLPILQTLVLQ 231


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,031,593
Number of Sequences: 37544
Number of extensions: 409594
Number of successful extensions: 1050
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)