Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E07
         (661 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK126437-1|BAC86549.1|  229|Homo sapiens protein ( Homo sapiens ...    30   8.4  
AF048730-1|AAC39664.1|  726|Homo sapiens cyclin T1 protein.            30   8.4  
AF045161-1|AAC39638.1|  726|Homo sapiens cyclin T protein.             30   8.4  

>AK126437-1|BAC86549.1|  229|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44473 fis, clone UTERU2030213. ).
          Length = 229

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 423 PRRRSRPEICPPFPIYHQP-TLLVVVSNICSRTRSVHQRAPL 545
           PR +SRP  C P  + H+P T     S  C +   VH++ P+
Sbjct: 160 PRPKSRPASCCPHSLRHRPLTSSPRSSQSCCQLFGVHRQRPI 201


>AF048730-1|AAC39664.1|  726|Homo sapiens cyclin T1 protein.
          Length = 726

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 73  KEPEXLXFRTXTKEQPEQWTSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGS 252
           K  E L  +    E  E    S+    A  L  + D  S  ++K+PI G+EN +   L  
Sbjct: 395 KHAEELAAQKRQLENMEANVKSQYAYAAQNLLSHHDSHSSVILKMPIEGSENPERPFLEK 454

Query: 253 VDLTNQIKLGAATAG 297
            D T  +K+    AG
Sbjct: 455 ADKT-ALKMRIPVAG 468


>AF045161-1|AAC39638.1|  726|Homo sapiens cyclin T protein.
          Length = 726

 Score = 29.9 bits (64), Expect = 8.4
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 73  KEPEXLXFRTXTKEQPEQWTSSRVRRQAGELTINSDGTSGAMVKVPITGNENHKLSALGS 252
           K  E L  +    E  E    S+    A  L  + D  S  ++K+PI G+EN +   L  
Sbjct: 395 KHAEELAAQKRQLENMEANVKSQYAYAAQNLLSHHDSHSSVILKMPIEGSENPERPFLEK 454

Query: 253 VDLTNQIKLGAATAG 297
            D T  +K+    AG
Sbjct: 455 ADKT-ALKMRIPVAG 468


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,233,800
Number of Sequences: 237096
Number of extensions: 2308449
Number of successful extensions: 3876
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3876
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)