Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E07
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49127-6|CAA88947.1|  454|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical pr...    27   8.9  
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z49127-6|CAA88947.1|  454|Caenorhabditis elegans Hypothetical
           protein F13D12.6 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 310 NVNRHGATLNKHSYSWN 360
           NVN  GATL  + YSWN
Sbjct: 92  NVNTDGATLRTNPYSWN 108


>Z82267-3|CAB05191.1|  186|Caenorhabditis elegans Hypothetical
           protein F38C2.5 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 452 PTISHLPSTNTVGGGLEYMFKDKIGASASAAHTDF 556
           P +    S      GL   F D  GASAS++ TDF
Sbjct: 151 PLMPQFSSWFAPSSGLSREFLDNFGASASSSSTDF 185


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 323 TELPSTNTHIPGIGDKLSVAGKVNLFHNNDHDLSAKAFATR-NMPTISHLPSTNTVGGGL 499
           T  P+ +T    IGD ++V     L ++N ++++A   ATR N P I+HL S      G 
Sbjct: 53  TFFPTWDTMKAKIGDFINV-NSTKLKNHNYNEMTAWLKATRLNYPNITHLYSAGKSVEGR 111

Query: 500 E 502
           E
Sbjct: 112 E 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,062
Number of Sequences: 27780
Number of extensions: 332222
Number of successful extensions: 745
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)