Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E05
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   1.4  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   1.8  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             24   2.4  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    22   9.7  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    22   9.7  

>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 125 DELEKVLHDKNFDPELKPYLE 187
           D L++V HD   D ELK +LE
Sbjct: 303 DTLKQVQHDAENDEELKDWLE 323


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 128 ELEKVLHDKNFDPELKPYLEEAF 196
           E   +   K   PELKP L EAF
Sbjct: 531 ERSSISPSKPLSPELKPLLNEAF 553


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 2   TRRIKHISKRGYKEL 46
           T +I+ I+KRGYK+L
Sbjct: 160 TEKIEDITKRGYKDL 174


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 128 ELEKVLHDKNFDPELKPYLEE 190
           EL K    ++F P LKP++E+
Sbjct: 337 ELNKFFDWESFHPLLKPWIEK 357


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 125 DELEKVLHDKNFDPELKPYLEEA 193
           D ++KV+H  NF+ + K  + EA
Sbjct: 109 DAVDKVIHHINFERDTKVQVFEA 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 643,983
Number of Sequences: 5004
Number of extensions: 7004
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)