Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E05
         (199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225...    26   3.7  
03_02_0762 - 10968888-10969466,10972522-10974175,10974277-109743...    26   4.8  
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    25   8.5  

>11_01_0300 +
           2253957-2254245,2254783-2254850,2254967-2255098,
           2255811-2255969,2256124-2256489
          Length = 337

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 8   RIKHISKRGYKELCIMKXXXXXXXXXXXXCGSTVKTWTYDELEKVL 145
           RI   S++G + +CI+              GS+  T+TY+   ++L
Sbjct: 124 RIMSFSQKGPRSICILSANGTISNVALSQPGSSGSTFTYEGRFEIL 169


>03_02_0762 -
           10968888-10969466,10972522-10974175,10974277-10974359,
           10974435-10974533,10974620-10974706,10974782-10974838,
           10974939-10975065,10975344-10975465,10975685-10975732,
           10975867-10976268
          Length = 1085

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 122 YDELEKVLHDKNFDPELKPYLEEAF 196
           Y+E  K+ HD+N D E   Y +  F
Sbjct: 644 YEETRKIRHDRNGDDEFFHYTDYRF 668


>04_04_0706 + 27419215-27419371,27419521-27419734,27419818-27419913,
            27420006-27420123,27420211-27420384,27420633-27420803,
            27420932-27420987,27421125-27421214,27421296-27421444,
            27421640-27421722,27421830-27421958,27422063-27422137,
            27422248-27422416,27422965-27423104,27423191-27423298,
            27423603-27423783,27424445-27424542,27424639-27424728,
            27424881-27425034,27425376-27425431,27425483-27425533,
            27425651-27425732,27425821-27425995,27426748-27426823,
            27426951-27427121,27427198-27427269,27427350-27427454,
            27427948-27428037,27428703-27428908,27428989-27429190,
            27429294-27429473,27429858-27429925,27430005-27430341,
            27430428-27430637,27430765-27431448,27431537-27431940,
            27432495-27432542,27432777-27433023,27433381-27433602,
            27433796-27434026
          Length = 2122

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 110  KTWTYDELEKVLHDKNFDPELKPYLEE 190
            K + YD  +K+L   NF   LKP + +
Sbjct: 1955 KCFLYDNDQKILDSSNFQALLKPIVSQ 1981


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,419,837
Number of Sequences: 37544
Number of extensions: 49364
Number of successful extensions: 113
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)