Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E05
         (199 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical p...    25   5.6  
Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z35719-4|CAA84798.1|  279|Caenorhabditis elegans Hypothetical pr...    25   5.6  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    25   5.6  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    25   5.6  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    25   5.6  

>Z68748-12|CAN86588.1|  792|Caenorhabditis elegans Hypothetical
           protein F13H10.4c protein.
          Length = 792

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 95  CGSTVKTWTYDELEKVLHDKNFDPELKPY 181
           C   +  + Y  LEKV    N DPE  PY
Sbjct: 52  CFILLHLYLYPNLEKVAPLPNIDPENAPY 80


>Z68748-10|CAL36500.1|  789|Caenorhabditis elegans Hypothetical
           protein F13H10.4b protein.
          Length = 789

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 95  CGSTVKTWTYDELEKVLHDKNFDPELKPY 181
           C   +  + Y  LEKV    N DPE  PY
Sbjct: 52  CFILLHLYLYPNLEKVAPLPNIDPENAPY 80


>Z68748-9|CAL36499.1|  796|Caenorhabditis elegans Hypothetical
           protein F13H10.4a protein.
          Length = 796

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 95  CGSTVKTWTYDELEKVLHDKNFDPELKPY 181
           C   +  + Y  LEKV    N DPE  PY
Sbjct: 59  CFILLHLYLYPNLEKVAPLPNIDPENAPY 87


>Z35719-4|CAA84798.1|  279|Caenorhabditis elegans Hypothetical
           protein F17C8.6 protein.
          Length = 279

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 119 TYDELEKVLHDKNFDPELK 175
           TYDELE+V  D++ D E++
Sbjct: 230 TYDELEEVEEDEDTDGEIR 248


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
            type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 119  TYDELEKVLHDKNFDPELK 175
            TYDELE+V  D++ D E++
Sbjct: 1736 TYDELEEVEEDEDTDGEIR 1754


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 119  TYDELEKVLHDKNFDPELK 175
            TYDELE+V  D++ D E++
Sbjct: 1714 TYDELEEVEEDEDTDGEIR 1732


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
            voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 119  TYDELEKVLHDKNFDPELK 175
            TYDELE+V  D++ D E++
Sbjct: 1736 TYDELEEVEEDEDTDGEIR 1754


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,196
Number of Sequences: 27780
Number of extensions: 41404
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)