Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_E04
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0129 + 18431820-18432224                                         31   0.56 
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548...    29   3.0  
04_04_1157 - 31333870-31334220,31334440-31334590,31334678-313349...    29   3.0  
01_01_0056 + 422141-422379,422524-422620,422697-422774,422871-42...    29   3.0  
11_06_0648 + 25873779-25874279,25874418-25875548                       28   5.2  

>01_05_0129 + 18431820-18432224
          Length = 134

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 212 RRRSRPEICPPFPIYHQPTLLVVVSNICSRT 120
           RRR RP   PP P  H P   V+V+   +RT
Sbjct: 4   RRRQRPSSSPPLPPEHSPLPSVIVATARART 34


>04_04_1159 -
           31352922-31353098,31354117-31354267,31354581-31354812,
           31354902-31355112,31355791-31355909,31355994-31356176,
           31356283-31356481,31356636-31357015,31357127-31357191,
           31357925-31357990,31358427-31358501,31358781-31358852,
           31359318-31359386,31359476-31359547,31359658-31359729,
           31360126-31360230,31360282-31360353,31361053-31361230,
           31361707-31361791
          Length = 860

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 98  PLTLISLTRMTIIWAAN*TYSRLHPDY 18
           P +L  LTRM I+WA++  ++   PDY
Sbjct: 183 PSSLSKLTRMKILWASDNNFTGQIPDY 209


>04_04_1157 -
           31333870-31334220,31334440-31334590,31334678-31334909,
           31335001-31335211,31335517-31335635,31335720-31335953,
           31336000-31336201,31336297-31336676,31336792-31336856,
           31337362-31337427,31337883-31337957,31338233-31338304,
           31338994-31339062,31339150-31339221,31339325-31339396,
           31339791-31339862,31339947-31340018,31340474-31340545,
           31340645-31340828,31341474-31341588
          Length = 961

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 98  PLTLISLTRMTIIWAAN*TYSRLHPDY 18
           P +L  LTRM I+WA++  ++   PDY
Sbjct: 208 PSSLSKLTRMQILWASDNNFTGQIPDY 234


>01_01_0056 +
           422141-422379,422524-422620,422697-422774,422871-422930,
           423019-423123,423743-423856,424145-424186,424380-424496,
           424568-424755,425502-425785,425869-425990,426118-426160,
           426265-426356,427331-427379,427623-427693,427793-427912,
           428586-428674,429266-429311,429926-429973
          Length = 667

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 198 SRTPSRINHGRCYETGSLYQQQTI 269
           SRTPS ++H   +E+G    QQTI
Sbjct: 16  SRTPSALHHNGAFESGEPSMQQTI 39


>11_06_0648 + 25873779-25874279,25874418-25875548
          Length = 543

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -3

Query: 503 VPGCAGKRVNLQLILMEPQVLWSRYR*LETKITSSVLLAPLISL 372
           V  C  K    QL++   Q    R+R ++++I S +LL P+ISL
Sbjct: 88  VLSCQDKSAVYQLVMARRQA--DRFRDVQSRIDSYLLLVPVISL 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,078,211
Number of Sequences: 37544
Number of extensions: 362735
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)