Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D23
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    41   1e-04
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    27   1.3  
SPAC22G7.11c ||SPAC4G8.01c|conserved fungal protein|Schizosaccha...    27   2.3  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   4.1  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   5.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.4  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.1  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   9.4  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.4  

>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
 Frame = +2

Query: 212 SGESSCNGQENGDASNGSERPHKKARFAWQ--VKGKYHLKNEISQSLNSTETFAHSNTPE 385
           SG S C    N       ERP +  R AWQ   +GK    NE +  +++ +T    +   
Sbjct: 42  SGRSICQPDTNNPTRWKYERPLETIR-AWQDVAEGKVPASNEKAARVSNLKTVP--SLKR 98

Query: 386 SSTEFNSNSMGSEENLEILGDYLLKQDFNTLDSVIKVTDDALLKPSSSV 532
            + E N+NS    +  E++   ++ +  +     +K+T+  LL PSSS+
Sbjct: 99  ENKEVNANSKPPVKQQEVIESTVISKSQSPSVKQLKLTESTLLAPSSSL 147


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 361 SFSRIKRLRDLVLQMIFSFDLPRKARFLMWALGSIRCVAIFLSIT 227
           SFSR   LR L  Q++ +F +     F +W L      + F+S++
Sbjct: 174 SFSRSDTLRSLYKQVMEAFQISDGTSFRLWYLNKSNLSSRFVSLS 218


>SPAC22G7.11c ||SPAC4G8.01c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 305 KGKYHLKNEISQSLNSTETFAHSNTPESST-EFNSNSMGSEENLEILGDYLLKQDFNTLD 481
           K   H  N   Q+    E +  S++    T ++++ + G + + E LGDY    DF+  +
Sbjct: 12  KATLHNPNVSQQAKERAEDYIESHSSGQETGDYSAQAGGRDLDYEDLGDYDEDADFDNEE 71

Query: 482 SVIKVTDDA 508
            +  + D++
Sbjct: 72  GLNVLGDES 80


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 479 LMC*NLASISNRLIFQGFPQSPYCS 405
           L+C + AS  +R+  QGFP    CS
Sbjct: 479 LLCLDAASYVSRMATQGFPHPSECS 503


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -1

Query: 510 RASSVTLITESNVLKSCFNK*SPNISRFSSEPILFELNSVED 385
           ++S + LITE    + CFN  SP   R    P      S ED
Sbjct: 116 QSSRIKLITEEEFKQICFNSSSPERDRLIIVPKEKPCPSFED 157


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +2

Query: 212 SGESSCNGQENGDASNGSERPHKKARFAWQVKGKYHLKNEISQSLNSTETFAHSNT-PES 388
           S  SS +      +S+ S RP   +  +  +       +  S S   +  F H++T   S
Sbjct: 373 SSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSSRS 432

Query: 389 STEFNSNSMGSEENLEIL 442
           S+  +S+S+ S  +  IL
Sbjct: 433 SSHSSSHSLSSLSSKPIL 450


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
 Frame = +2

Query: 245 GDASNGSERPHKKARFAWQVKGK-YHL----KNEISQSLNSTETFA---HSNTPESSTEF 400
           G +S  + R + + R ++   G  YHL    K+  S SL S  + +    SN+   S+  
Sbjct: 187 GSSSQHASR-YNEGRGSFDTLGTHYHLSKSRKSSSSDSLYSVSSMSIKNDSNSDSLSSSS 245

Query: 401 NSNSMGSEENLEI 439
           +S+  GS+ENL I
Sbjct: 246 SSDVSGSDENLPI 258


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 16/63 (25%), Positives = 28/63 (44%)
 Frame = +2

Query: 242 NGDASNGSERPHKKARFAWQVKGKYHLKNEISQSLNSTETFAHSNTPESSTEFNSNSMGS 421
           NG+  +  ++  KK   A Q       + +   S +STET   +N   S+ +  +N+  S
Sbjct: 551 NGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTETGNSTNKEASTEDTKANATAS 610

Query: 422 EEN 430
             N
Sbjct: 611 APN 613


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 237 KKMATHLMDPSAHIRKRALRGKSKEN 314
           KK ++    P+AH R+R  +GK + N
Sbjct: 239 KKGSSPFSPPNAHSRRRKSQGKDQSN 264


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 293  AWQVKGKYHLKNEISQSLNSTETFAHSNTP 382
            A+++ G +HL N    +L   +TF  S+ P
Sbjct: 1228 AFELLGNFHLNNFTMTALMEFKTFLESSNP 1257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,895,072
Number of Sequences: 5004
Number of extensions: 34686
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)