Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0005_D23
(534 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1269 + 35352825-35352888,35353645-35353968,35355062-353551... 29 3.1
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 5.4
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642... 27 7.2
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 27 9.5
08_01_0068 + 471729-472460,472578-472655,473270-473507,474130-47... 27 9.5
06_02_0325 + 14428065-14428799,14428916-14428993,14429607-144298... 27 9.5
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 27 9.5
>02_05_1269 +
35352825-35352888,35353645-35353968,35355062-35355183,
35355361-35355482,35355651-35355755,35356402-35356765,
35357181-35357321,35357619-35359109
Length = 910
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 296 WQV-KGKYHLKNEISQSLNSTETFAHSNTPESSTEFNSNSMGS 421
W V KG E+++ LN T + S TP SST S S S
Sbjct: 235 WFVCKGNLICTREVNEGLNRTGSSTTSTTPRSSTSDYSRSRSS 277
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +2
Query: 203 TESSGESSCNGQENGDASNGSE----RPHKKARFAWQVKGKYHLKNEISQSLNSTETFAH 370
++SS ESS GQ+ A++ S P + + +GK + + S L+ ++ F++
Sbjct: 761 SQSSSESSLAGQDKSKAASSSAPFSFSPQFGSTSPFAGQGKSNSVSSQSTLLSGSQ-FSN 819
Query: 371 SNTPESSTEFNSNSMGSEE 427
S + ++ST NSN + SE+
Sbjct: 820 SLSAQTSTS-NSNLLSSEK 837
>05_05_0020 -
21560896-21561352,21563399-21563480,21564143-21564263,
21564424-21565074,21565206-21565338,21565677-21565728,
21566115-21566244,21567241-21567300,21567444-21567536,
21567795-21567919,21568263-21568353,21568828-21569127,
21569415-21570038
Length = 972
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = +2
Query: 209 SSGESSCNGQENGDASNGSERPH---KKARFAWQVKGKYH 319
S GE++C G NG + G + +K F ++ KYH
Sbjct: 669 SCGENACEGDHNGSSMRGLDSDDSIGRKHHFRSKLSRKYH 708
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = +2
Query: 233 GQENGDASNGSERPHKKARFAWQVKGKYHLKNEISQSLNSTETFAH-------SNTPESS 391
G+ENGD ++G+ +K + + K + + ++++ + T + +TP+
Sbjct: 627 GKENGDPNDGAFDVNKLQKMRNKGNKKNEVASNVAKNTSKANTKKNLKKNRVWDDTPDDK 686
Query: 392 TEFNSNSMGSEENLEILGDYLLKQDFNTLDSVIKVTDDA 508
+ + E E++ ++KQ + +D V+ D+
Sbjct: 687 KKLDFTDPADERGDEVIDQVVVKQGESMMDKDDVVSSDS 725
>08_01_0068 +
471729-472460,472578-472655,473270-473507,474130-474205,
474820-474961,475326-475619,476037-476249
Length = 590
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 227 CNGQENGDASNGSERPHKKARFAWQVKGKYHLKNE 331
C E GD SE +K +F W KY+ K +
Sbjct: 286 CQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGD 320
>06_02_0325 +
14428065-14428799,14428916-14428993,14429607-14429844,
14431199-14431296,14431770-14432063,14432418-14432702
Length = 575
Score = 27.1 bits (57), Expect = 9.5
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 227 CNGQENGDASNGSERPHKKARFAWQVKGKYHLKNE 331
C E GD SE +K +F W KY+ K +
Sbjct: 287 CQNLERGDKYMNSEDVYKDVQFIWDNCTKYNSKGD 321
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +2
Query: 311 KYHLKN----EISQSLNSTETFAHSNTPESSTEF--NSNSMGSEENLEILGDYLL 457
K LKN +I L+ E HS +PE S +F + +G E N E+L +L+
Sbjct: 662 KQRLKNADERKIRYDLSGIEKNGHSKSPEQSFQFAREEDLVGIEINKELLMQWLV 716
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,771,644
Number of Sequences: 37544
Number of extensions: 180403
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -