Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D23
         (534 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.9  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 341 SLNSTETFAHSNTPESSTEFNSNSMGSEEN 430
           S NST T  ++NT  S+   N+N+  +  N
Sbjct: 223 SNNSTITAGNANTNASNNNNNNNNNNNNNN 252


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/69 (17%), Positives = 28/69 (40%)
 Frame = +2

Query: 197 NITESSGESSCNGQENGDASNGSERPHKKARFAWQVKGKYHLKNEISQSLNSTETFAHSN 376
           N  + +G    + ++NG+  NG+++   K     Q   K +   +     N  +   + N
Sbjct: 476 NDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDN 535

Query: 377 TPESSTEFN 403
               S++ +
Sbjct: 536 QVHHSSKLH 544


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 249 SPFSCPLHDDSPLDS 205
           +P+S P +DD+ +DS
Sbjct: 367 TPYSTPEYDDTYMDS 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,648
Number of Sequences: 438
Number of extensions: 2170
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)