Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D22
         (434 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   5.0  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   6.7  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   6.7  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   6.7  
SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme Spa1|Schi...    24   8.8  

>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 165  GMICYFICFGMSILRF 118
            G+I  FICFG+S + F
Sbjct: 2102 GLIASFICFGLSYVTF 2117


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 178 RNIKRNDLLFYMFWNVNIEIL 116
           R +K ND L Y+ + +N+E L
Sbjct: 47  RQVKLNDFLSYIQYEINLETL 67


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 25  PTRYCDVA-FLDLAHDILKCLLKILFVH 105
           P  Y +++ F  LAHD+LK L  I+  H
Sbjct: 684 PQNYDNMSSFKPLAHDVLKKLCTIILFH 711


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 285 EHNKRKKTSIVTFWVIQS-LYKQCNIF 208
           E NKR+   +VT W IQ  + +Q N F
Sbjct: 595 EENKREYVDLVTVWRIQKRIEEQFNAF 621


>SPBC577.14c |spa1|spa|ornithine decarboxylase antizyme
           Spa1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 43  VAFLDLAHDILKCLLKILFVHRKITESQY 129
           VA +DLA D L C   +LFV +  +   Y
Sbjct: 170 VAIIDLAVDRLHCSKLVLFVDKNNSSLPY 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,733,675
Number of Sequences: 5004
Number of extensions: 34004
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)