Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_D21
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1383 - 33144047-33144603,33145554-33147129                       29   3.2  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    27   7.4  

>04_04_1383 - 33144047-33144603,33145554-33147129
          Length = 710

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 24  GSHSRIRWPHRASVLRVMCPATATSTKPSSLQFKGFVLK 140
           GSHS+  +P RA V  V  PAT  ST         F+ K
Sbjct: 50  GSHSQPTFPPRAPVRAVPPPATLVSTATPGALLAAFLAK 88


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 361 SYIIFQITNFLIYSNK*NGIVPFFT 435
           +++IF I N LI+  K +G VPF T
Sbjct: 417 AFVIFFILNALIWGEKSSGAVPFTT 441


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,668,594
Number of Sequences: 37544
Number of extensions: 220641
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)